RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 APOA4P06727 396 aa26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 DLDP09622 509 aaKnown RBP26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 FGF3P11487 239 aaPredicted RBP26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 CRABP2P29373 138 aa26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 ZXDBP98169 803 aa26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 SLC12A1Q13621 1099 aa26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 CRLF3Q8IUI8 442 aa26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 CARNMT1Q8N4J0 409 aa26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 BRSK1Q8TDC3 778 aa26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 SCUBE2Q9NQ36 999 aa26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 CXXC1Q9P0U4 656 aaPredicted RBP26.53■■□□□ 1.84
CCDC88C-205ENST00000553403 ZMPSTE24O75844 475 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 SERPINE1P05121 402 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 CPA3P15088 417 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 GRK2P25098 689 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 RGRP47804 291 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 ARFIP2P53365 341 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 ARF5P84085 180 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 NSUN2Q08J23 767 aaKnown RBP eCLIP26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 RAPH1Q70E73 1250 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 SLC41A1Q8IVJ1 513 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 CPXM2Q8N436 756 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 TSNARE1Q96NA8 513 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 TCF25Q9BQ70 676 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 KCNK13Q9HB14 408 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 ZNF358Q9NW07 568 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 DCTN4Q9UJW0 460 aa26.52■■□□□ 1.84
CCDC88C-205ENST00000553403 TRAV19A0A0A6YYK7 116 aa26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 BMPR1AP36894 532 aa26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 LEPRP48357 1165 aaKnown RBP26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 NUMBP49757 651 aa26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 IRF9Q00978 393 aa26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 INO80DQ53TQ3 878 aaPredicted RBP26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 MAB21L3Q8N8X9 362 aa26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 C1QTNF1Q9BXJ1 281 aa26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 MYLK2Q9H1R3 596 aa26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 NMRAL1Q9HBL8 299 aa26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 OR51B4Q9Y5P0 310 aa26.51■■□□□ 1.83
CCDC88C-205ENST00000553403 GLUD1P00367 558 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 SKIV2L2P42285 1042 aaKnown RBP26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 SCNN1BP51168 640 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 CLCN5P51795 746 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 RAB10P61026 200 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 POU4F1Q01851 419 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 GALNT3Q14435 633 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 RTL10Q7L3V2 364 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 C10orf107Q8IVU9 208 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 RDH11Q8TC12 318 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 PHOSPHO2Q8TCD6 241 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 FEM1AQ9BSK4 669 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 CAMSAP3Q9P1Y5 1249 aaPredicted RBP26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 SH3BP1Q9Y3L3 701 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 DENND4CQ5VZ89 1909 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 A0A0G2JND7 137 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 E2F8A0AVK6 867 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 HAUS5O94927 633 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 CD160O95971 181 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 CKMP06732 381 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 STMN1P16949 149 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 KCNA4P22459 653 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 GMPRP36959 345 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 ERVFC1P60507 584 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 PRAMEP78395 509 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 FSCBQ5H9T9 825 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 BLOC1S5Q8TDH9 187 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 STYXQ8WUJ0 223 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 HERVK_113Q902F9 699 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 HDAC10Q969S8 669 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 ERP27Q96DN0 273 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 ELMO2Q96JJ3 720 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 TMEM120AQ9BXJ8 343 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 ECT2Q9H8V3 914 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 ASAH2Q9NR71 780 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 KCNK4Q9NYG8 393 aa26.5■■□□□ 1.83
CCDC88C-205ENST00000553403 H0YHG0 523 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 ATP5HO75947 161 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 TMCC1O94876 653 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 SLC35E2BP0CK96 405 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 MZF1P28698 734 aaPredicted RBP26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 ARSDP51689 593 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 ZCCHC23Q6ZST2 131 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 CILP2Q8IUL8 1156 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 MFSD6LQ8IWD5 586 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 MRPL43Q8N983 215 aaKnown RBP26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 SREK1Q8WXA9 508 aaKnown RBP26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 ALG14Q96F25 216 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 RASSF4Q9H2L5 321 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 CFAP97Q9P2B7 532 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 DNMT3BQ9UBC3 853 aaKnown RBP26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 ACOT9Q9Y305 439 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 SLC4A7Q9Y6M7 1214 aa26.49■■□□□ 1.83
CCDC88C-205ENST00000553403 A0A087X1B8 175 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 SNAP91O60641 907 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 RALBP11234 206 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 CTNNB1P35222 781 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 NCALDP61601 193 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 CDH18Q13634 790 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 RALGPS1Q5JS13 557 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 MPP7Q5T2T1 576 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms