RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 WDTC1Q8N5D0 677 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 NXPE3Q969Y0 559 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 ITPKCQ96DU7 683 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 TRMT2BQ96GJ1 504 aaKnown RBP7.76□□□□□ -1.17
LIMA1-216ENST00000552909 SMARCD1Q96GM5 515 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 C7orf26Q96N11 449 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 RILPQ96NA2 401 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 CCT7Q99832 543 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 HAUS8Q9BT25 410 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 DHRS4Q9BTZ2 278 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 C1QTNF1Q9BXJ1 281 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 OSBPL6Q9BZF3 934 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 ZFP14Q9HCL3 533 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 CSNK1G1Q9HCP0 422 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 SELENONQ9NZV5 590 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 CACNA1HO95180 2353 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 HEPACAM2A8MVW5 462 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 HHLA1C9JL84 531 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 ECI2O75521 394 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 VDRP11473 427 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 SRFP11831 508 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 ETV4P43268 484 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 TMED10P49755 219 aaKnown RBP7.75□□□□□ -1.17
LIMA1-216ENST00000552909 ENTPD1P49961 510 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 ARSEP51690 589 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 SLC5A3P53794 718 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 AQP5P55064 265 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 NUP107P57740 925 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 GPX6P59796 221 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 NOMO3P69849 1222 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 ZXDBP98169 803 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 PFKPQ01813 784 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 CDK18Q07002 472 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 GPS1Q13098 491 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 UBAP2LQ14157 1087 aaKnown RBP7.75□□□□□ -1.17
LIMA1-216ENST00000552909 THOC7Q6I9Y2 204 aaKnown RBP7.75□□□□□ -1.17
LIMA1-216ENST00000552909 NANOGNBQ7Z5D8 188 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 CMTM8Q8IZV2 173 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 SCAIQ8N9R8 606 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 TTC13Q8NBP0 860 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 TMEM35BQ8NCS4 154 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 HIPK4Q8NE63 616 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 UBA3Q8TBC4 463 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 PYROXD1Q8WU10 500 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 PBXIP1Q96AQ6 731 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 ELSPBP1Q96BH3 223 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 CCDC124Q96CT7 223 aaKnown RBP7.75□□□□□ -1.17
LIMA1-216ENST00000552909 TTLL2Q9BWV7 592 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 TASP1Q9H6P5 420 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 TRPV4Q9HBA0 871 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 TRPV5Q9NQA5 729 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 TBC1D23Q9NUY8 699 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 C6orf203Q9P0P8 240 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-216ENST00000552909 RAPGEFL1Q9UHV5 662 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 KIAA1257Q9ULG3 409 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 CA14Q9ULX7 337 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 PCDHGC3Q9UN70 934 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 COQ6Q9Y2Z9 468 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 TSC22D4Q9Y3Q8 395 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 FAM32AQ9Y421 112 aaKnown RBP7.75□□□□□ -1.17
LIMA1-216ENST00000552909 AP4B1Q9Y6B7 739 aa7.75□□□□□ -1.17
LIMA1-216ENST00000552909 IQANK1A0A1B0GTG1 560 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 FUOMA2VDF0 154 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ZNF840PA6NDX5 716 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PRR33A8MZF0 331 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ITM2AO43736 263 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 FGF19O95750 216 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 GSTT2P0CG29 244 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 GSTT2BP0CG30 244 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 AOC1P19801 751 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 STT3AP46977 705 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PTP4A2Q12974 167 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 BCL2A1Q16548 175 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ZNF423Q2M1K9 1284 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 HSF5Q4G112 596 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ATG16L1Q676U5 607 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 SMYD5Q6GMV2 418 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 LPCAT2Q7L5N7 544 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 MON1AQ86VX9 555 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 TTC30AQ86WT1 665 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 SIX5Q8N196 739 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PQLC1Q8N2U9 271 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 POU5F2Q8N7G0 328 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ARL14EPQ8N8R7 260 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 CATSPER1Q8NEC5 780 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 TTC16Q8NEE8 873 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 RAB3IL1Q8TBN0 382 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 USP13Q92995 863 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ZFYVE19Q96K21 471 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 C11orf70Q9BRQ4 267 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 RNF38Q9H0F5 515 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 FAM124BQ9H5Z6 455 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ACSS3Q9H6R3 686 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PRDM16Q9HAZ2 1276 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 TRPC7Q9HCX4 862 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 KIAA1522Q9P206 1035 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 UXTQ9UBK9 157 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 SHOC2Q9UQ13 582 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 H3BNX3 289 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 LSM1O15116 133 aaKnown RBP7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms