RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 DOCK4Q8N1I0 1966 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 CFAP47Q6ZTR5 3102 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 AKAP13Q12802 2813 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 ARID1BQ8NFD5 2236 aaPredicted RBP10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 CACNA1GO43497 2377 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 PLXNA2O75051 1894 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 TRPM6Q9BX84 2022 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 A0A1W2PQJ5 194 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 H3BRJ5 948 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 DDX3XO00571 662 aaKnown RBP eCLIP10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 OPA1O60313 960 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 GIMD1P0DJR0 217 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 ERCC2P18074 760 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 PTMSP20962 102 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 HSPA9P38646 679 aaKnown RBP10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 EIF4A3P38919 411 aaKnown RBP10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 ARL4AP40617 200 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 AP1S1P61966 158 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 PIGHQ14442 188 aaPredicted RBP10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 IQCB1Q15051 598 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 KLHL40Q2TBA0 621 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZNF542PQ5EBM4 170 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 PPP6R3Q5H9R7 873 aaPredicted RBP10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 FAXCQ5TGI0 409 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 CDCP2Q5VXM1 449 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 AFMIDQ63HM1 303 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 C19orf48Q6RUI8 117 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 MACC1Q6ZN28 852 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 SRLQ86TD4 932 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 MARCH9Q86YJ5 346 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 PAF1Q8N7H5 531 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 LMX1AQ8TE12 382 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 HNRNPLLQ8WVV9 542 aaKnown RBP10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 FGF11Q92914 225 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 NAT6Q93015 286 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 CELF6Q96J87 481 aaKnown RBP10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 NAP1L5Q96NT1 182 aaPredicted RBP10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 SNRNP25Q9BV90 132 aaKnown RBP10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 CINPQ9BW66 212 aaPredicted RBP10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 KCTD5Q9NXV2 234 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 SEPT3Q9UH03 358 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 GGT7Q9UJ14 662 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 ITM2BQ9Y287 266 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 ATP8A1Q9Y2Q0 1164 aa10.98□□□□□ -0.65
VTI1BP3-201ENST00000550220 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 EME2A4GXA9 379 aaPredicted RBP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 LMO7DNF2Z398 122 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 GOLGA6L19H0YKK7 550 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 J3KR12 359 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 INSIG1O15503 277 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 SPINT1O43278 529 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 LZTS3O60299 673 aaPredicted RBP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 LRCH4O75427 683 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 ANXA6P08133 673 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 ALPIP09923 528 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 KELP23276 732 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 SEMG2Q02383 582 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 BCL2L1Q07817 233 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 EIF2B5Q13144 721 aaKnown RBP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 ELOCQ15369 112 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 NR0B2Q15466 257 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 DPYSL2Q16555 572 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 COL28A1Q2UY09 1125 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 RALGPS1Q5JS13 557 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 ESRP1Q6NXG1 681 aaKnown RBP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 PDZD3Q86UT5 571 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 CAMK1DQ8IU85 385 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 LRRC49Q8IUZ0 686 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 PHACTR4Q8IZ21 702 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 ARFGAP1Q8N6T3 406 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 TP53I13Q8NBR0 393 aaPredicted RBP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 SNIP1Q8TAD8 396 aaKnown RBP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 MAPK15Q8TD08 544 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 NSMCE1Q8WV22 266 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 SPOCK2Q92563 424 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 PSKH2Q96QS6 385 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 KCTD15Q96SI1 283 aaPredicted RBP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 WRAP53Q9BUR4 548 aaKnown RBP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 PCDH12Q9NPG4 1184 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 GPATCH2LQ9NWQ4 482 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 APOBEC3BQ9UH17 382 aaKnown RBP10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 IP6K2Q9UHH9 426 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 LCMT1Q9UIC8 334 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 DOLKQ9UPQ8 538 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 TMEM131Q92545 1883 aa10.97□□□□□ -0.65
VTI1BP3-201ENST00000550220 DMXL2Q8TDJ6 3036 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZFYVE26Q68DK2 2539 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 PLXNB3Q9ULL4 1909 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 DFFAO00273 331 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 PDE2AO00408 941 aaPredicted RBP10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 ATMINO43313 823 aaPredicted RBP10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 BUB1BO60566 1050 aaPredicted RBP10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 TCEA3O75764 348 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 NEBLO76041 1014 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 PIGNO95427 931 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 SERPING1P05155 500 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 TPM3P06753 285 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 SKILP12757 684 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 KRT10P13645 584 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms