RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 NSFP46459 744 aaKnown RBP8.57□□□□□ -1.04
USP28-215ENST00000545608 CYTH1Q15438 398 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 CDKN3Q16667 212 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 DEFB133Q30KQ1 61 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 SCYL2Q6P3W7 929 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 GUSBP11Q6P575 273 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 MON1BQ7L1V2 547 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 EFL1Q7Z2Z2 1120 aaKnown RBP8.57□□□□□ -1.04
USP28-215ENST00000545608 VPS36Q86VN1 386 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 ZSCAN30Q86W11 494 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 ZNF354CQ86Y25 554 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 SPACA3Q8IXA5 215 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 RTL3Q8N8U3 475 aaKnown RBP8.57□□□□□ -1.04
USP28-215ENST00000545608 C3orf20Q8ND61 904 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 IFI44Q8TCB0 444 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 MAPK15Q8TD08 544 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 HMCESQ96FZ2 354 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 NAF1Q96HR8 494 aaKnown RBP8.57□□□□□ -1.04
USP28-215ENST00000545608 GDAP1L1Q96MZ0 367 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 DEPDC7Q96QD5 511 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 UBL7Q96S82 380 aaPredicted RBP8.57□□□□□ -1.04
USP28-215ENST00000545608 OSBPL1AQ9BXW6 950 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 TTYH3Q9C0H2 523 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 ABCG4Q9H172 646 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 USP29Q9HBJ7 922 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 MBNL1Q9NR56 388 aaKnown RBP8.57□□□□□ -1.04
USP28-215ENST00000545608 LIMA1Q9UHB6 759 aaKnown RBP8.57□□□□□ -1.04
USP28-215ENST00000545608 SALL4Q9UJQ4 1053 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 FZD10Q9ULW2 581 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 TRPM6Q9BX84 2022 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 DOCK4Q8N1I0 1966 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 TDRD6O60522 2096 aaKnown RBP8.57□□□□□ -1.04
USP28-215ENST00000545608 MYLKQ15746 1914 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 FREM2Q5SZK8 3169 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 A0A1W2PNU3 283 aaPredicted RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 EME2A4GXA9 379 aaPredicted RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 ZSCAN5CA6NGD5 496 aaPredicted RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 EIF4E1BA6NMX2 242 aaKnown RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 LGALS16A8MUM7 142 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 WASH4PA8MWX3 477 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 TPP1O14773 563 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 CASC3O15234 703 aaKnown RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 CREB3O43889 395 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 TM7SF2O76062 418 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 CALB1P05937 261 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 LSSP48449 732 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 ZNF143P52747 638 aaPredicted RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 ADKP55263 362 aaKnown RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 YBEYP58557 167 aaPredicted RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 RHOAP61586 193 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 RPL7AP62424 266 aaKnown RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 GABREP78334 506 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 OGDHQ02218 1023 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 TLE3Q04726 772 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 RAD51Q06609 339 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 ISXQ2M1V0 245 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 KLHL40Q2TBA0 621 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 TMEM52BQ4KMG9 183 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 INO80DQ53TQ3 878 aaPredicted RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 PRRT3Q5FWE3 981 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 EFHC2Q5JST6 749 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 PERM1Q5SV97 790 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 ZCCHC8Q6NZY4 707 aaKnown RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 CRTC1Q6UUV9 634 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 CLEC17AQ6ZS10 378 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 RBM43Q6ZSC3 357 aaKnown RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 APTXQ7Z2E3 356 aaKnown RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 PHACTR4Q8IZ21 702 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 TP53I13Q8NBR0 393 aaPredicted RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 NEK11Q8NG66 645 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 CXorf40AQ8TE69 158 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 CASKIN2Q8WXE0 1202 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 ARHGEF26Q96DR7 871 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 HIC2Q96JB3 615 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 FCRL3Q96P31 734 aaPredicted RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 MCEEQ96PE7 176 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 IL12RB2Q99665 862 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 AGPAT1Q99943 283 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 WRAP53Q9BUR4 548 aaKnown RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 CLPBQ9H078 707 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 SEPT11Q9NVA2 429 aaKnown RBP8.56□□□□□ -1.04
USP28-215ENST00000545608 SPASTQ9UBP0 616 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 LHX3Q9UBR4 397 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 COQ6Q9Y2Z9 468 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 MFHAS1Q9Y4C4 1052 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 DAAM1Q9Y4D1 1078 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 WDFY3Q8IZQ1 3526 aa8.56□□□□□ -1.04
USP28-215ENST00000545608 CELSR3Q9NYQ7 3312 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 PTPRQQ9UMZ3 2332 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 LRRC10BA6NIK2 292 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 J3KR12 359 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 MUSKO15146 869 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 ATXN7O15265 892 aaPredicted RBP8.55□□□□□ -1.04
USP28-215ENST00000545608 YY2O15391 372 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 BUB1BO60566 1050 aaPredicted RBP8.55□□□□□ -1.04
USP28-215ENST00000545608 C1QL1O75973 258 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 PIGNO95427 931 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 IGSF6O95976 241 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 CELA2BP08218 269 aaPredicted RBP8.55□□□□□ -1.04
USP28-215ENST00000545608 TSHRP16473 764 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms