RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 H3BSA7 217 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 FBP2O00757 339 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 CLIC3O95833 236 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 PCSK6P29122 969 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 CD151P48509 253 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 SLC10A7Q0GE19 358 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 DDR2Q16832 855 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 AGMOQ6ZNB7 445 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 DNAI2Q9GZS0 605 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 C17orf102A2RUQ5 167 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 FASTKQ14296 549 aaKnown RBP15.15■□□□□ 0.02
USP28-214ENST00000545540 MYLK3Q32MK0 819 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 HABP4Q5JVS0 413 aaKnown RBP15.15■□□□□ 0.02
USP28-214ENST00000545540 METTL21CQ5VZV1 264 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 TMEM207Q6UWW9 146 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 SPPL2BQ8TCT7 592 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 NTAN1Q96AB6 310 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 SMARCD1Q96GM5 515 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 NSUN5Q96P11 429 aaKnown RBP15.15■□□□□ 0.02
USP28-214ENST00000545540 MRPL1Q9BYD6 325 aaKnown RBP15.15■□□□□ 0.02
USP28-214ENST00000545540 CAAP1Q9H8G2 361 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 ZDHHC7Q9NXF8 308 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 ABI2Q9NYB9 513 aaPredicted RBP15.15■□□□□ 0.02
USP28-214ENST00000545540 AURKCQ9UQB9 309 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 NCF1BA6NI72 391 aaPredicted RBP15.15■□□□□ 0.02
USP28-214ENST00000545540 A8MT66 165 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 NCF1CA8MVU1 366 aaPredicted RBP15.15■□□□□ 0.02
USP28-214ENST00000545540 PDLIM1O00151 329 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 CLGNO14967 610 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 STRNO43815 780 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 ATP5BP06576 529 aaKnown RBP15.15■□□□□ 0.02
USP28-214ENST00000545540 NCF1P14598 390 aaPredicted RBP15.15■□□□□ 0.02
USP28-214ENST00000545540 CDKN2DP55273 166 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 DBN1Q16643 649 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 CUZD1Q86UP6 607 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 ZFP28Q8NHY6 868 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 HDAC10Q969S8 669 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 FAM192AQ9GZU8 254 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 OSER1Q9NX31 292 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 BTRCQ9Y297 605 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 A0A1B0GTL3 188 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 MAGEB16A2A368 324 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 SAC3D1A6NKF1 404 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 NCAM2O15394 837 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 CASP2P42575 452 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 FOXA1P55317 472 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 ARPP19P56211 112 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 PLIN5Q00G26 463 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 GRB14Q14449 540 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 LIMS2Q7Z4I7 341 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 PGAM4Q8N0Y7 254 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 NUDT8Q8WV74 236 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 IPO11Q9UI26 975 aaKnown RBP15.15■□□□□ 0.02
USP28-214ENST00000545540 TCAF1Q9Y4C2 921 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 PCDHGA7Q9Y5G6 932 aa15.15■□□□□ 0.02
USP28-214ENST00000545540 VILLO15195 856 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 UBDO15205 165 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 TADA2AO75478 443 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 CRYBB1P53674 252 aaPredicted RBP15.14■□□□□ 0.01
USP28-214ENST00000545540 PTPRRQ15256 657 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 CEP70Q8NHQ1 597 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 IGSF5Q9NSI5 407 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 FOXD2O60548 495 aaPredicted RBP15.14■□□□□ 0.01
USP28-214ENST00000545540 RTN3O95197 1032 aaPredicted RBP15.14■□□□□ 0.01
USP28-214ENST00000545540 CD52P31358 61 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 GRK4P32298 578 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 APLP1P51693 650 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 INHBCP55103 352 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 KIF19Q2TAC6 998 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 C11orf91Q3C1V1 193 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 KLHDC10Q6PID8 442 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 DCLRE1AQ6PJP8 1040 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 SLC9A7Q96T83 725 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.14■□□□□ 0.01
USP28-214ENST00000545540 PSMD12O00232 456 aaPredicted RBP15.14■□□□□ 0.01
USP28-214ENST00000545540 ACOT8O14734 319 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 SCAMP3O14828 347 aaKnown RBP15.14■□□□□ 0.01
USP28-214ENST00000545540 CCR1P32246 355 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 SLC7A2P52569 658 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 SLC5A3P53794 718 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 SCAPQ12770 1279 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 VPS26BQ4G0F5 336 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 ALFQ53S48 1182 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 XKR4Q5GH76 650 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 GNASQ5JWF2 1037 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 BLOC1S5Q8TDH9 187 aa15.14■□□□□ 0.01
USP28-214ENST00000545540 AAR2Q9Y312 384 aaKnown RBP15.14■□□□□ 0.01
USP28-214ENST00000545540 PRRC2BQ5JSZ5 2229 aaKnown RBP15.14■□□□□ 0.01
USP28-214ENST00000545540 A0A1W2PQH9 124 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 MGEA5O60502 916 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 GRIA3P42263 894 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 ADAM17P78536 824 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 LAMB3Q13751 1172 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 MGAT5BQ3V5L5 792 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 MAP3K21Q5TCX8 1036 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 PM20D1Q6GTS8 502 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 TTC9BQ8N6N2 239 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 PSMG2Q969U7 264 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 TBATAQ96M53 351 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 NR5A2O00482 541 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms