RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MARCH4Q9P2E8 410 aaPredicted RBP16.45■□□□□ 0.22
COL4A1-204ENST00000543140 ARL5AQ9Y689 179 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 GOLGA8QA0A0J9YX86 632 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 LOC285095A0A1B0GVY8 99 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 GOLGA8OA6NCC3 632 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 MROH6A6NGR9 719 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 E9PBE3 544 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 GOLGA8NF8WBI6 632 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 KLHL41O60662 606 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 PIGNO95427 931 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 COL6A2P12110 1019 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 SLC11A2P49281 568 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 GNA12Q03113 381 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 HECTD3Q5T447 861 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 RDH11Q8TC12 318 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 TADA1Q96BN2 335 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 IGSF21Q96ID5 467 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 RANBP9Q96S59 729 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 CYP4F11Q9HBI6 524 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 MID2Q9UJV3 735 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 TARM1B6A8C7 271 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 NEMP1O14524 444 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 LDB2O43679 373 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 TSPAN3O60637 253 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 ATP5BP06576 529 aaKnown RBP16.44■□□□□ 0.22
COL4A1-204ENST00000543140 AOC1P19801 751 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 HOXD9P28356 352 aaPredicted RBP16.44■□□□□ 0.22
COL4A1-204ENST00000543140 POU4F1Q01851 419 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 CILP2Q8IUL8 1156 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 CALML6Q8TD86 181 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 TBATAQ96M53 351 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 RNF38Q9H0F5 515 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 CWH43Q9H720 699 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 EBF2Q9HAK2 575 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 PDFQ9HBH1 243 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 CHD5Q8TDI0 1954 aa16.44■□□□□ 0.22
COL4A1-204ENST00000543140 NEMP2A6NFY4 417 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 H2AFYO75367 372 aaKnown RBP16.43■□□□□ 0.22
COL4A1-204ENST00000543140 CXCL10P02778 98 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 HMGA1P17096 107 aaKnown RBP16.43■□□□□ 0.22
COL4A1-204ENST00000543140 ERFP50548 548 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 APLP1P51693 650 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 TLE2Q04725 743 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 TBCCQ15814 346 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 TAF12Q16514 161 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 EPGNQ6UW88 154 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 KIAA0408Q6ZU52 694 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 TMC7Q7Z402 723 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 PHTF2Q8N3S3 785 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 WBP2Q969T9 261 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 PRICKLE1Q96MT3 831 aaPredicted RBP16.43■□□□□ 0.22
COL4A1-204ENST00000543140 FAM161BQ96MY7 647 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 THTPAQ9BU02 230 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 DRC3Q9H069 523 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 WDR55Q9H6Y2 383 aaPredicted RBP16.43■□□□□ 0.22
COL4A1-204ENST00000543140 PAK6Q9NQU5 681 aaPredicted RBP16.43■□□□□ 0.22
COL4A1-204ENST00000543140 CRYL1Q9Y2S2 319 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 MTF2Q9Y483 593 aaPredicted RBP16.43■□□□□ 0.22
COL4A1-204ENST00000543140 C2orf78A6NCI8 922 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 DCXO43602 365 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 RPSAP08865 295 aaKnown RBP16.43■□□□□ 0.22
COL4A1-204ENST00000543140 CORO1AP31146 461 aaKnown RBP16.43■□□□□ 0.22
COL4A1-204ENST00000543140 LEPRP48357 1165 aaKnown RBP16.43■□□□□ 0.22
COL4A1-204ENST00000543140 POLD2P49005 469 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 PLD1Q13393 1074 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 C16orf59Q7L2K0 433 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 TTC16Q8NEE8 873 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 DNAJC1Q96KC8 554 aaKnown RBP16.43■□□□□ 0.22
COL4A1-204ENST00000543140 OR52B2Q96RD2 323 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 SEZ6LQ9BYH1 1024 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 FAM96AQ9H5X1 160 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 SORCS3Q9UPU3 1222 aa16.43■□□□□ 0.22
COL4A1-204ENST00000543140 TANC1Q9C0D5 1861 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 LOC100653049A0A140TA62 436 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 H3BNC9 293 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 KRT34O76011 436 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 PAPSS2O95340 614 aaPredicted RBP16.42■□□□□ 0.22
COL4A1-204ENST00000543140 CCDC166P0CW27 439 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 RGRP47804 291 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 PRMT2P55345 433 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 TNK2Q07912 1038 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 PEX6Q13608 980 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 TRIM60Q495X7 471 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 ACSBG2Q5FVE4 666 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 ACBD5Q5T8D3 534 aaPredicted RBP16.42■□□□□ 0.22
COL4A1-204ENST00000543140 ZNF461Q8TAF7 563 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 SH3RF2Q8TEC5 729 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 NSMCE3Q96MG7 304 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 CDK5RAP1Q96SZ6 601 aaKnown RBP16.42■□□□□ 0.22
COL4A1-204ENST00000543140 OSBPL1AQ9BXW6 950 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 MRPL46Q9H2W6 279 aaKnown RBP16.42■□□□□ 0.22
COL4A1-204ENST00000543140 IGSF5Q9NSI5 407 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 SMPD4Q9NXE4 827 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.42■□□□□ 0.22
COL4A1-204ENST00000543140 ZDHHC2Q9UIJ5 367 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 G3BP2Q9UN86 482 aaKnown RBP16.42■□□□□ 0.22
COL4A1-204ENST00000543140 C15orf41Q9Y2V0 281 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 RAP2CQ9Y3L5 183 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 A0A087X1B8 175 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 SLC7A4O43246 635 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 276 ms