RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 CENPTQ96BT3 561 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 MGME1Q9BQP7 344 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 CINPQ9BW66 212 aaPredicted RBP14.34□□□□□ -0.11
USP28-209ENST00000540925 KLHL11Q9NVR0 708 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 SEPT3Q9UH03 358 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 POM121BA6NF01 834 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 PAK4O96013 591 aaPredicted RBP14.33□□□□□ -0.12
USP28-209ENST00000540925 THEGLP0DJG4 465 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 KDELR1P24390 212 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 MMP12P39900 470 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 CLDN2P57739 230 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 AP1S1P61966 158 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 IL9RQ01113 521 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 MESDQ14696 234 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 SUZ12Q15022 739 aaKnown RBP14.33□□□□□ -0.12
USP28-209ENST00000540925 KYAT3Q6YP21 454 aaKnown RBP14.33□□□□□ -0.12
USP28-209ENST00000540925 CCDC170Q8IYT3 715 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 ATPAF2Q8N5M1 289 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 DENND6BQ8NEG7 585 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 KLHDC7BQ96G42 594 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 PANX2Q96RD6 677 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 MYOCQ99972 504 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 ATP13A3Q9H7F0 1226 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 ANGPTL2Q9UKU9 493 aa14.33□□□□□ -0.12
USP28-209ENST00000540925 ARID1BQ8NFD5 2236 aaPredicted RBP14.33□□□□□ -0.12
USP28-209ENST00000540925 RIOK3O14730 519 aaKnown RBP14.32□□□□□ -0.12
USP28-209ENST00000540925 HTRA2O43464 458 aaPredicted RBP14.32□□□□□ -0.12
USP28-209ENST00000540925 TOP3BO95985 862 aaKnown RBP14.32□□□□□ -0.12
USP28-209ENST00000540925 SERPINA4P29622 427 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 HSPA9P38646 679 aaKnown RBP14.32□□□□□ -0.12
USP28-209ENST00000540925 GARSP41250 739 aaKnown RBP14.32□□□□□ -0.12
USP28-209ENST00000540925 SSR1P43307 286 aaKnown RBP14.32□□□□□ -0.12
USP28-209ENST00000540925 ARRB1P49407 418 aaPredicted RBP14.32□□□□□ -0.12
USP28-209ENST00000540925 RENBPP51606 427 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 PFN3P60673 137 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 SLC10A2Q12908 348 aaPredicted RBP14.32□□□□□ -0.12
USP28-209ENST00000540925 AGERQ15109 404 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 TPRG1LQ5T0D9 272 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 ALG1LQ6GMV1 187 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 RAB44Q7Z6P3 723 aaPredicted RBP14.32□□□□□ -0.12
USP28-209ENST00000540925 SLCO6A1Q86UG4 719 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 MAP7D3Q8IWC1 876 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 KCTD6Q8NC69 237 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 SETD7Q8WTS6 366 aaKnown RBP14.32□□□□□ -0.12
USP28-209ENST00000540925 MAML1Q92585 1016 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 IFT43Q96FT9 208 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 TSGA13Q96PP4 275 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 NUDCD1Q96RS6 583 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 CDC6Q99741 560 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 CALN1Q9BXU9 219 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 PCDH12Q9NPG4 1184 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 ANKRD36A6QL64 1941 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 LRRK1Q38SD2 2015 aa14.32□□□□□ -0.12
USP28-209ENST00000540925 FAM208BQ5VWN6 2430 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 FAM221BA6H8Z2 402 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 A6NNZ2 444 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 TMEM110-MUSTN1A8MSY1 372 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 NEMP1O14524 444 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 ZZEF1O43149 2961 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 MMP20O60882 483 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 TRIM16O95361 564 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 FTH1P19P0C7X4 201 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 GJC1P36383 396 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 SLC1A1P43005 524 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 MAGEA1P43355 309 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 GBE1Q04446 702 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 ELP6Q0PNE2 266 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 RALGDSQ12967 914 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 BNIP3Q12983 259 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 TAZQ16635 292 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 ST3GAL2Q16842 350 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 RALGPS1Q5JS13 557 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 SLC9A4Q6AI14 798 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 Q6ZSR6 202 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 GATAD2AQ86YP4 633 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 DCP2Q8IU60 420 aaKnown RBP14.31□□□□□ -0.12
USP28-209ENST00000540925 PLD5Q8N7P1 536 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 TP53I13Q8NBR0 393 aaPredicted RBP14.31□□□□□ -0.12
USP28-209ENST00000540925 RHBDD1Q8TEB9 315 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 ADAMTS14Q8WXS8 1223 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 RNF157Q96PX1 679 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 TMEM121BQ9BXQ6 578 aaPredicted RBP14.31□□□□□ -0.12
USP28-209ENST00000540925 NOD2Q9HC29 1040 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 DTLQ9NZJ0 730 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 ATP8A1Q9Y2Q0 1164 aa14.31□□□□□ -0.12
USP28-209ENST00000540925 DMXL2Q8TDJ6 3036 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 A0A0A6YYK5 440 aaPredicted RBP14.3□□□□□ -0.12
USP28-209ENST00000540925 SPTY2D1-AS1A0A0U1RR47 76 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.3□□□□□ -0.12
USP28-209ENST00000540925 TTC24A2A3L6 582 aaPredicted RBP14.3□□□□□ -0.12
USP28-209ENST00000540925 CFAP69A5D8W1 941 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 SOCS5O75159 536 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 ATXN1LP0C7T5 689 aaKnown RBP14.3□□□□□ -0.12
USP28-209ENST00000540925 GIMD1P0DJR0 217 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 GM2AP17900 193 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 CCNCP24863 283 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 IGFALSP35858 605 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 MMP13P45452 471 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 RABIFP47224 123 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 SCNN1BP51168 640 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms