RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CILP2Q8IUL8 1156 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 RBM15BQ8NDT2 890 aaKnown RBP13.88□□□□□ -0.19
RTN3-210ENST00000540798 VWCEQ96DN2 955 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 ELMO2Q96JJ3 720 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 TSNARE1Q96NA8 513 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 TRIB3Q96RU7 358 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 MGME1Q9BQP7 344 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 CLSTN3Q9BQT9 956 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 SAGE1Q9NXZ1 904 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 RAP2CQ9Y3L5 183 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 ANKRD36A6QL64 1941 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 B2RBV5 119 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 GJB3O75712 270 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 GJB5O95377 273 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 HSPA4LO95757 839 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 EZRP15311 586 aaKnown RBP13.88□□□□□ -0.19
RTN3-210ENST00000540798 OR1D2P34982 312 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 CPOXP36551 454 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 RCN2Q14257 317 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.88□□□□□ -0.199e-7■■■■□ 25.5
RTN3-210ENST00000540798 OR52K2Q8NGK3 314 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 NXNL1Q96CM4 212 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 PRICKLE1Q96MT3 831 aaPredicted RBP13.88□□□□□ -0.19
RTN3-210ENST00000540798 SEMA3CQ99985 751 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 COG4Q9H9E3 785 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 NOP53Q9NZM5 478 aaKnown RBP13.88□□□□□ -0.19
RTN3-210ENST00000540798 SPECC1L-ADORA2AF8WAN1 911 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 MATN2O00339 956 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 COCHO43405 550 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 DLX3O60479 287 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 FGF1P05230 155 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 HLA-DPA1P20036 260 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 GRIA4P48058 902 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 ALDH7A1P49419 539 aaKnown RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 ILF2Q12905 390 aaKnown RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 RBM20Q5T481 1227 aaKnown RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 LSMEM2Q8N112 164 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 GABPB2Q8TAK5 448 aaPredicted RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 TRMT2BQ96GJ1 504 aaKnown RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 OLFM1Q99784 485 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 MRPL57Q9BQC6 102 aaKnown RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.87□□□□□ -0.19
RTN3-210ENST00000540798 XPR1Q9UBH6 696 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 A0A0D9SEW6 157 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 ANP32DO95626 131 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 TPBGLP0DKB5 382 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 RPL17P18621 184 aaKnown RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 SAT1P21673 171 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 ETFBP38117 255 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 ARSDP51689 593 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 CCL23P55773 120 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 DNAJB13P59910 316 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 GNA12Q03113 381 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 USP4Q13107 963 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 VWA5B1Q5TIE3 1220 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 METTL21CQ5VZV1 264 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 CFAP52Q8N1V2 620 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 TDRD5Q8NAT2 981 aaKnown RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 GPR150Q8NGU9 434 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 TTC8Q8TAM2 541 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 MAPK15Q8TD08 544 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 PDCD6IPQ8WUM4 868 aaKnown RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 MRPL46Q9H2W6 279 aaKnown RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 MCM8Q9UJA3 840 aa13.87□□□□□ -0.19
RTN3-210ENST00000540798 ZFP37Q9Y6Q3 630 aaPredicted RBP13.87□□□□□ -0.19
RTN3-210ENST00000540798 PSMA3P25788 255 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 SLC11A2P49281 568 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 MNX1P50219 401 aaPredicted RBP13.86□□□□□ -0.19
RTN3-210ENST00000540798 LAMB3Q13751 1172 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 HECTD3Q5T447 861 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 ZNF354CQ86Y25 554 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 UBXN10Q96LJ8 280 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 ILKAPQ9H0C8 392 aaPredicted RBP13.86□□□□□ -0.19
RTN3-210ENST00000540798 KDELR3O43731 214 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 ENTPD5O75356 428 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 SNUPNO95149 360 aaKnown RBP13.86□□□□□ -0.19
RTN3-210ENST00000540798 S1PR4O95977 384 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 LMNAP02545 664 aaKnown RBP13.86□□□□□ -0.19
RTN3-210ENST00000540798 KLKB1P03952 638 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 CHRNGP07510 517 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 GLDCP23378 1020 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 CPA2P48052 419 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 GLRBP48167 497 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 ZNF235Q14590 738 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 ACCSLQ4AC99 568 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 DNAL1Q4LDG9 190 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 SLC9B1Q4ZJI4 515 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 TPGS2Q68CL5 300 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 SLC39A5Q6ZMH5 540 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 CHST9Q7L1S5 443 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 ZNF461Q8TAF7 563 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 HEXDCQ8WVB3 486 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 MCUR1Q96AQ8 359 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 TOX2Q96NM4 488 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 DEFB118Q96PH6 123 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 PSKH2Q96QS6 385 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 C15orf41Q9Y2V0 281 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 TRIM17Q9Y577 477 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 GBF1Q92538 1859 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms