RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 PCOLCE2Q9UKZ9 415 aa15.21■□□□□ 0.03
UBE3B-212ENST00000540230 TOP3BO95985 862 aaKnown RBP15.2■□□□□ 0.02
UBE3B-212ENST00000540230 BNIP3Q12983 259 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 GRM3Q14832 879 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 SPA17Q15506 151 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 ABI3BPQ7Z7G0 1075 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 TMTC1Q8IUR5 882 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 BAHD1Q8TBE0 780 aaPredicted RBP15.2■□□□□ 0.02
UBE3B-212ENST00000540230 SETD7Q8WTS6 366 aaKnown RBP15.2■□□□□ 0.02
UBE3B-212ENST00000540230 SKA1Q96BD8 255 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 RNF25Q96BH1 459 aaPredicted RBP15.2■□□□□ 0.02
UBE3B-212ENST00000540230 KLHDC7BQ96G42 594 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 ZNF641Q96N77 438 aaPredicted RBP15.2■□□□□ 0.02
UBE3B-212ENST00000540230 ATP13A3Q9H7F0 1226 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 COQ6Q9Y2Z9 468 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 PCDHGC4Q9Y5F7 938 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 PCDHGB2Q9Y5G2 931 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 ALG6Q9Y672 507 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 DUSP10Q9Y6W6 482 aa15.2■□□□□ 0.02
UBE3B-212ENST00000540230 RIOK3O14730 519 aaKnown RBP15.19■□□□□ 0.02
UBE3B-212ENST00000540230 SPOPO43791 374 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 PCDHGA12O60330 932 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 PMLP29590 882 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 SERPINA4P29622 427 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 CDC25BP30305 580 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 SLC1A1P43005 524 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 MMP13P45452 471 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 MARCKSL1P49006 195 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 AP1S1P61966 158 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 SIM1P81133 766 aaPredicted RBP15.19■□□□□ 0.02
UBE3B-212ENST00000540230 BCL2L1Q07817 233 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 IHHQ14623 411 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 TMEM52BQ4KMG9 183 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 TPRG1LQ5T0D9 272 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 MARC1Q5VT66 337 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 LRRC38Q5VT99 294 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 MFSD7Q6UXD7 560 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 NPNTQ6UXI9 565 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 RHOT1Q8IXI2 618 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 TEX26Q8N6G2 289 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 HCAR2Q8TDS4 363 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 MAML1Q92585 1016 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 NUDCD1Q96RS6 583 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 NOD2Q9HC29 1040 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 NT5MQ9NPB1 228 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 GPR27Q9NS67 375 aa15.19■□□□□ 0.02
UBE3B-212ENST00000540230 TDRD6O60522 2096 aaKnown RBP15.19■□□□□ 0.02
UBE3B-212ENST00000540230 A0A0A6YYK5 440 aaPredicted RBP15.18■□□□□ 0.02
UBE3B-212ENST00000540230 A0A0U1RQJ8 604 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 FLRT2O43155 660 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 XPAP23025 273 aaPredicted RBP15.18■□□□□ 0.02
UBE3B-212ENST00000540230 EPHA8P29322 1005 aaPredicted RBP15.18■□□□□ 0.02
UBE3B-212ENST00000540230 IGFALSP35858 605 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 MMP12P39900 470 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 RENBPP51606 427 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 OVGP1Q12889 678 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 TRAF2Q12933 501 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 RALGDSQ12967 914 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 LLGL1Q15334 1064 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 TRIP6Q15654 476 aaKnown RBP15.18■□□□□ 0.02
UBE3B-212ENST00000540230 CFAP58Q5T655 872 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 SLC9A4Q6AI14 798 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 BRAT1Q6PJG6 821 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 KYAT3Q6YP21 454 aaKnown RBP15.18■□□□□ 0.02
UBE3B-212ENST00000540230 Q6ZSR6 202 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 PTAR1Q7Z6K3 402 aaPredicted RBP15.18■□□□□ 0.02
UBE3B-212ENST00000540230 CXorf40AQ8TE69 158 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 SAP25Q8TEE9 199 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 LACRTQ9GZZ8 138 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 ERVMER34-1Q9H9K5 563 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 SCUBE2Q9NQ36 999 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 MBNL1Q9NR56 388 aaKnown RBP15.18■□□□□ 0.02
UBE3B-212ENST00000540230 ATP8A1Q9Y2Q0 1164 aa15.18■□□□□ 0.02
UBE3B-212ENST00000540230 ARID1BQ8NFD5 2236 aaPredicted RBP15.18■□□□□ 0.02
UBE3B-212ENST00000540230 A6NNZ2 444 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 ZNF487B1APH4 448 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 MATN3O15232 486 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 HTRA2O43464 458 aaPredicted RBP15.17■□□□□ 0.02
UBE3B-212ENST00000540230 SDC3O75056 442 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 TM7SF2O76062 418 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 C6P13671 934 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 HSPA9P38646 679 aaKnown RBP15.17■□□□□ 0.02
UBE3B-212ENST00000540230 ADCY2Q08462 1091 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 ELP6Q0PNE2 266 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 SGCGQ13326 291 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 HNRNPDQ14103 355 aaKnown RBP15.17■□□□□ 0.02
UBE3B-212ENST00000540230 PTPRRQ15256 657 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 IFI16Q16666 785 aaKnown RBP15.17■□□□□ 0.02
UBE3B-212ENST00000540230 B4GALNT4Q76KP1 1039 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 KANSL1Q7Z3B3 1105 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 LRRC49Q8IUZ0 686 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.17■□□□□ 0.02
UBE3B-212ENST00000540230 TP53I13Q8NBR0 393 aaPredicted RBP15.17■□□□□ 0.02
UBE3B-212ENST00000540230 TPCN2Q8NHX9 752 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 RHBDD1Q8TEB9 315 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 NSMCE1Q8WV22 266 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 ASB12Q8WXK4 309 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 KRT35Q92764 455 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 CENPTQ96BT3 561 aa15.17■□□□□ 0.02
UBE3B-212ENST00000540230 HDAC11Q96DB2 347 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms