RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 BHMTQ93088 406 aa17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 TCEAL4Q96EI5 215 aa17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 IMP4Q96G21 291 aaKnown RBP17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 MRGPRX2Q96LB1 330 aa17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 NAT9Q9BTE0 207 aa17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 MMADHCQ9H3L0 296 aaPredicted RBP17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 PDFQ9HBH1 243 aa17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 CHRAC1Q9NRG0 131 aa17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 TAS2R1Q9NYW7 299 aa17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 DLGAP2Q9P1A6 1054 aa17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 LRCH1Q9Y2L9 728 aa17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 CHD5Q8TDI0 1954 aa17.26■□□□□ 0.35
PCDHB17P-201ENST00000539533 ALDH1A2O94788 518 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 PSMG1O95456 288 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 POLBP06746 335 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 ESRRAP11474 423 aaPredicted RBP17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 ADRA1AP35348 466 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 NPY2RP49146 381 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 SLC34A1Q06495 639 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 DENND5AQ6IQ26 1287 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 CHST9Q7L1S5 443 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 SCG3Q8WXD2 468 aaKnown RBP17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 DDX50Q9BQ39 737 aaKnown RBP17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 RETREG1Q9H6L5 497 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 CFAP97Q9P2B7 532 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 SLC17A6Q9P2U8 582 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 CEP290O15078 2479 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 MUSKO15146 869 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 TBL1XO60907 577 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 CLASP2O75122 1294 aaKnown RBP17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 RHOCP08134 193 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 MMP2P08253 660 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 CD86P42081 329 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 SLC7A9P82251 487 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 SLC18A2Q05940 514 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 FSCBQ5H9T9 825 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 CXorf57Q6NSI4 855 aaKnown RBP17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 LRRC74BQ6ZQY2 392 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 SH2D5Q6ZV89 423 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 TTC7BQ86TV6 843 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 UCMAQ8WVF2 138 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 WDR60Q8WVS4 1066 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 MFSD3Q96ES6 412 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 GCNAQ96QF7 691 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 CERS4Q9HA82 394 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 DNMT3BQ9UBC3 853 aaKnown RBP17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 TBC1D30Q9Y2I9 924 aa17.25■□□□□ 0.35
PCDHB17P-201ENST00000539533 TRAV19A0A0A6YYK7 116 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 ILVBLA1L0T0 632 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 FCHO1O14526 889 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 TBX10O75333 385 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 RB1P06400 928 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 MYL2P10916 166 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 PYGBP11216 843 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 CHRNA4P43681 627 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 WNT3AP56704 352 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 ZNF697Q5TEC3 545 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 RNF220Q5VTB9 566 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 KDELC1Q6UW63 502 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 CYS1Q717R9 158 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 TMEM135Q86UB9 458 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 SHKBP1Q8TBC3 707 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 ARRDC2Q8TBH0 407 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 STMN2Q93045 179 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 ZNF669Q96BR6 464 aaPredicted RBP17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 TMA16Q96EY4 203 aaKnown RBP17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 FSD1LQ9BXM9 530 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 CCDC78A2IDD5 438 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 LATS1O95835 1130 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 IL1BP01584 269 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 PDCD2Q16342 344 aaPredicted RBP17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 SLC5A9Q2M3M2 681 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 TMCO4Q5TGY1 634 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 RNF219Q5W0B1 726 aaPredicted RBP17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 RANBP10Q6VN20 620 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 SETD3Q86TU7 594 aaPredicted RBP17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 RBM23Q86U06 439 aaKnown RBP17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 BBS7Q8IWZ6 715 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 CARNMT1Q8N4J0 409 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 ZFAND2BQ8WV99 257 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 ZNF778Q96MU6 729 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 IL22Q9GZX6 179 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 ATP13A1Q9HD20 1204 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 STX18Q9P2W9 335 aaKnown RBP17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 TRANK1O15050 2925 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 BPTFQ12830 3046 aa17.24■□□□□ 0.35
PCDHB17P-201ENST00000539533 GBF1Q92538 1859 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 KDELR3O43731 214 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 C1RP00736 705 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 ERVK-10P10266 1014 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 SERPINB4P48594 390 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 OXCT1P55809 520 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 TNK2Q07912 1038 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 MPP3Q13368 585 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 RCN2Q14257 317 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 ANKRD20A4Q4UJ75 823 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 FAM91A1Q658Y4 838 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 DTX3LQ8TDB6 740 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms