RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PLD2O14939 933 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 BUB1O43683 1085 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 IGSF6O95976 241 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 CELA2BP08218 269 aaPredicted RBP13.72□□□□□ -0.21
SS18-204ENST00000539244 ALPIP09923 528 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 TIMP2P16035 220 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 CHRNB2P17787 502 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 ELP6Q0PNE2 266 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 PTP4A2Q12974 167 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 LRRC14Q15048 493 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 AGERQ15109 404 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 IRF4Q15306 451 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 LRRC73Q5JTD7 316 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 LEKR1Q6ZMV7 388 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 CCDC81Q6ZN84 652 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 RTL3Q8N8U3 475 aaKnown RBP13.72□□□□□ -0.21
SS18-204ENST00000539244 SLC20A1Q8WUM9 679 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 SCG3Q8WXD2 468 aaKnown RBP13.72□□□□□ -0.21
SS18-204ENST00000539244 EDEM3Q9BZQ6 932 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 GANQ9H2C0 597 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 ATXN7L1Q9ULK2 861 aaPredicted RBP13.72□□□□□ -0.21
SS18-204ENST00000539244 UNC13CQ8NB66 2214 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 BSNQ9UPA5 3926 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 MYO18BQ8IUG5 2567 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 WASH4PA8MWX3 477 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 D6RAR5 112 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 RASGRP1O95267 797 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 UNGP13051 313 aaPredicted RBP13.71□□□□□ -0.21
SS18-204ENST00000539244 ITIH2P19823 946 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 CCKBRP32239 447 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 YBEYP58557 167 aaPredicted RBP13.71□□□□□ -0.21
SS18-204ENST00000539244 NFATC4Q14934 902 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 ALG11Q2TAA5 492 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 WSCD2Q2TBF2 565 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 DPCR1Q3MIW9 517 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 HSP90AA4PQ58FG1 418 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 KIAA1614Q5VZ46 1190 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 FOXR1Q6PIV2 292 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 TRIM72Q6ZMU5 477 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 B3GNT8Q7Z7M8 397 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 KYQ8NBH2 561 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 OR6C4Q8NGE1 309 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 PCDH19Q8TAB3 1148 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 FAM172AQ8WUF8 416 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 CCNL2Q96S94 520 aaPredicted RBP13.71□□□□□ -0.21
SS18-204ENST00000539244 C11orf70Q9BRQ4 267 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 WRAP53Q9BUR4 548 aaKnown RBP13.71□□□□□ -0.21
SS18-204ENST00000539244 KLC2Q9H0B6 622 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 RABGEF1Q9UJ41 708 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 DOLKQ9UPQ8 538 aa13.71□□□□□ -0.21
SS18-204ENST00000539244 A0A1W2PQM1 296 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 EFSO43281 561 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 KRT3P12035 628 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 EEF1GP26641 437 aaKnown RBP13.7□□□□□ -0.22
SS18-204ENST00000539244 JAM2P57087 298 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 RHOAP61586 193 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 SERINC3Q13530 473 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 GRM3Q14832 879 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 PARP15Q460N3 678 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 TCP11X2Q5H9J9 407 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 RAB11FIP2Q7L804 512 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 SLFN11Q7Z7L1 901 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 GKN2Q86XP6 184 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 HID1Q8IV36 788 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 FBXO39Q8N4B4 442 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 ATL2Q8NHH9 583 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 SLC30A5Q8TAD4 765 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 CCDC74AQ96AQ1 378 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 HMCESQ96FZ2 354 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 GFM1Q96RP9 751 aaKnown RBP13.7□□□□□ -0.22
SS18-204ENST00000539244 APOOQ9BUR5 198 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 STRADBQ9C0K7 418 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 SAMSN1Q9NSI8 373 aaKnown RBP13.7□□□□□ -0.22
SS18-204ENST00000539244 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.7□□□□□ -0.22
SS18-204ENST00000539244 LHX3Q9UBR4 397 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 DACH1Q9UI36 760 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 DAAM1Q9Y4D1 1078 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 DGKBQ9Y6T7 804 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 PIEZO2Q9H5I5 2752 aa13.7□□□□□ -0.22
SS18-204ENST00000539244 RASA4BC9J798 803 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 PES1O00541 588 aaKnown RBP13.69□□□□□ -0.22
SS18-204ENST00000539244 INSIG1O15503 277 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 RASA4O43374 803 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 GFPT2O94808 682 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 GJB6O95452 261 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 CTSEP14091 401 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 HTR1BP28222 390 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 EPHB2P29323 1055 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 SLC5A2P31639 672 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 RFC1P35251 1148 aaPredicted RBP13.69□□□□□ -0.22
SS18-204ENST00000539244 UGT1A5P35504 534 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 SOX5P35711 763 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 SRP54P61011 504 aaKnown RBP13.69□□□□□ -0.22
SS18-204ENST00000539244 CCL7P80098 99 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 MTM1Q13496 603 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 CYTH1Q15438 398 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 UGP2Q16851 508 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 ZSCAN23Q3MJ62 389 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 CT47A1Q5JQC4 288 aaPredicted RBP13.69□□□□□ -0.22
SS18-204ENST00000539244 XKR5Q6UX68 686 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms