RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 SYT10Q6XYQ8 523 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 STK40Q8N2I9 435 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 ATP6V0D2Q8N8Y2 350 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 LRRC57Q8N9N7 239 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 TMEM145Q8NBT3 493 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 FIBINQ8TAL6 211 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 PTPRN2Q92932 1015 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 PGAP3Q96FM1 320 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 NAPGQ99747 312 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 ABCG4Q9H172 646 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 KDM4CQ9H3R0 1056 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 DDX56Q9NY93 547 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 SLCO3A1Q9UIG8 710 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 PACSIN2Q9UNF0 486 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 ERVW-1Q9UQF0 538 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 TLR6Q9Y2C9 796 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 HBS1LQ9Y450 684 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 JRKLQ9Y4A0 524 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 DOPEY1Q5JWR5 2465 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 GOLGA6L7A0A1B0GV03 622 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 CCDC66A2RUB6 948 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 CASC3O15234 703 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 TBL1XO60907 577 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 MOCS2O96007 188 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 ADH1BP00325 375 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 ASLP04424 464 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 SLC6A4P31645 630 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 MLLT3P42568 568 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 HDAC4P56524 1084 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 ST8SIA6P61647 398 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 SRSF6Q13247 344 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 NNTQ13423 1086 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 KRT81Q14533 505 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 SMTNL2Q2TAL5 461 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 C4orf17Q53FE4 359 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 BOLA3Q53S33 107 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 FAM133BQ5BKY9 247 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 BRMS1LQ5PSV4 323 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 MEI1Q5TIA1 1274 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 NUGGCQ68CJ6 796 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 RFWD3Q6PCD5 774 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 SLFN11Q7Z7L1 901 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 NT5DC3Q86UY8 548 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 TRIM69Q86WT6 500 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 CCDC50Q8IVM0 306 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 UNC45BQ8IWX7 931 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 IFI44Q8TCB0 444 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 MAPK15Q8TD08 544 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 HSPH1Q92598 858 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 CENPIQ92674 756 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 NT5C3BQ969T7 300 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 SGF29Q96ES7 293 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 MYEOVQ96EZ4 313 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 KLHDC7BQ96G42 594 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 TKTL2Q9H0I9 626 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 USP29Q9HBJ7 922 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 PIGVQ9NUD9 493 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 NLGN3Q9NZ94 848 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 MAN2B2Q9Y2E5 1009 aa12.7□□□□□ -0.38
CLSTN3-208ENST00000538933 EDDM13A0A1B0GTR0 161 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 PRAMEF26H0Y7S4 382 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 K7ESM1 405 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 SCAMP1O15126 338 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 PLRG1O43660 514 aaKnown RBP12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 ENDOD1O94919 500 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 TNFSF15O95150 251 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 KRT1P04264 644 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 SRPRAP08240 638 aaKnown RBP12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 CTNNA2P26232 953 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 MZF1P28698 734 aaPredicted RBP12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 AIF1P55008 147 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 INHBCP55103 352 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 RWDD2BP57060 319 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 TAS2R40P59535 323 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 MTA1Q13330 715 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 ZC3H12AQ5D1E8 599 aaKnown RBP12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 FSCBQ5H9T9 825 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 ERMARDQ5T6L9 678 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 SEL1L2Q5TEA6 688 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 LRRC38Q5VT99 294 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 NYAP1Q6ZVC0 841 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 USP53Q70EK8 1073 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 CPNE8Q86YQ8 564 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 ARL14Q8N4G2 192 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 WDR24Q96S15 920 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 DHX35Q9H5Z1 703 aaKnown RBP12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 SARDHQ9UL12 918 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 AP4E1Q9UPM8 1137 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 CACNA1DQ01668 2161 aa12.69□□□□□ -0.38
CLSTN3-208ENST00000538933 LRRD1A4D1F6 860 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 ZNF500O60304 480 aaPredicted RBP12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 IL1BP01584 269 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 IGLV3-25P01717 112 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 IGLV3-27P01718 113 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 THEGLP0DJG4 465 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 SFTPCP11686 197 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 VAV1P15498 845 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 CTNNA1P35221 906 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 SLC11A2P49281 568 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms