RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ZNF438Q7Z4V0 828 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 IRF2BP1Q8IU81 584 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 PCDH20Q8N6Y1 951 aaKnown RBP9.27□□□□□ -0.93
USP28-205ENST00000537706 SLC4A11Q8NBS3 891 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 PLEKHO2Q8TD55 490 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 ALG14Q96F25 216 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 FAXDC2Q96IV6 333 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 EPSTI1Q96J88 318 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 TNKS2Q9H2K2 1166 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 TMEM63CQ9P1W3 806 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 ZSCAN5CA6NGD5 496 aaPredicted RBP9.26□□□□□ -0.93
USP28-205ENST00000537706 RHOCP08134 193 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 CD99P14209 185 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 HOXD13P35453 343 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 GPLD1P80108 840 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 SQSTM1Q13501 440 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 GSE1Q14687 1217 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 IRF4Q15306 451 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 CARD16Q5EG05 197 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 VWA2Q5GFL6 755 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 RYBPQ8N488 228 aaPredicted RBP9.26□□□□□ -0.93
USP28-205ENST00000537706 ZDHHC1Q8WTX9 485 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 FAM149B1Q96BN6 582 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 SNRNP40Q96DI7 357 aaKnown RBP9.26□□□□□ -0.93
USP28-205ENST00000537706 GBP4Q96PP9 640 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 APOOQ9BUR5 198 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 ULBP3Q9BZM4 244 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 CEP44Q9C0F1 390 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 ZDHHC6Q9H6R6 413 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 AGPAT4Q9NRZ5 378 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 WASF2Q9Y6W5 498 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 OTOGQ6ZRI0 2925 aa9.26□□□□□ -0.93
USP28-205ENST00000537706 SETD2Q9BYW2 2564 aaPredicted RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 A0A1B0GUH1 482 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 C16orf96A6NNT2 1141 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 KCNU1A8MYU2 1149 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 TULP2O00295 520 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 CACNB4O00305 520 aaPredicted RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 KRT86O43790 486 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 MMP20O60882 483 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 FURINP09958 794 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 CD19P15391 556 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 MPSTP25325 297 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 RAD23BP54727 409 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 MAZP56270 477 aaKnown RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 YWHAEP62258 255 aaKnown RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 DNM1Q05193 864 aaKnown RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 ZC3H12AQ5D1E8 599 aaKnown RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 RETSATQ6NUM9 610 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 EPM2AIP1Q7L775 607 aaPredicted RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 NXPE1Q8N323 547 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 BMPERQ8N8U9 685 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 DCAF4L2Q8NA75 395 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 Q8NA96 180 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 GLIS1Q8NBF1 620 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 TP53I13Q8NBR0 393 aaPredicted RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 ST6GALNAC3Q8NDV1 305 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 OR10G6Q8NH81 332 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 C19orf60Q96EN9 201 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 GSDMCQ9BYG8 508 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 TRIM55Q9BYV6 548 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 MLXIPLQ9NP71 852 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 MBNL1Q9NR56 388 aaKnown RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 CISHQ9NSE2 258 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 ASF1BQ9NVP2 202 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 XPO7Q9UIA9 1087 aaKnown RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 VPS51Q9UID3 782 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 COPG1Q9Y678 874 aaKnown RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 LRBAP50851 2863 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 DOCK9Q9BZ29 2069 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 ZNF106Q9H2Y7 1883 aaKnown RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 K7ERQ8 282 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 ZG16O60844 167 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 ENDOD1O94919 500 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 MT-CO1P00395 513 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 MT-ND3P03897 115 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 PTMSP20962 102 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 XPAP23025 273 aaPredicted RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 F8A1P23610 371 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 ABL2P42684 1182 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 CDH4P55283 916 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 SLC20A2Q08357 652 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 KLHL40Q2TBA0 621 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 ZNF805Q5CZA5 627 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 SNAP47Q5SQN1 464 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 CLEC17AQ6ZS10 378 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 TMEM135Q86UB9 458 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 CISD2Q8N5K1 135 aaKnown RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 OR56A4Q8NGH8 313 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 UBA3Q8TBC4 463 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 APOBEC3GQ9HC16 384 aaKnown RBP9.25□□□□□ -0.93
USP28-205ENST00000537706 MOSPD1Q9UJG1 213 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 FRMD4BQ9Y2L6 1034 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 PCDHGA6Q9Y5G7 932 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 OR51B4Q9Y5P0 310 aa9.25□□□□□ -0.93
USP28-205ENST00000537706 MED13LQ71F56 2210 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 IGHV1OR21-1A0A087WYE8 117 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 A8MU76 341 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 SNAP91O60641 907 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 SNRPB2P08579 225 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms