RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 RPP30P78346 268 aaKnown RBP2.9□□□□□ -1.95
CD44-238ENST00000534296 SLC18A2Q05940 514 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 CHRNDQ07001 517 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.9□□□□□ -1.95
CD44-238ENST00000534296 DDX10Q13206 875 aaKnown RBP2.9□□□□□ -1.95
CD44-238ENST00000534296 G3BP1Q13283 466 aaKnown RBP eCLIP2.9□□□□□ -1.95
CD44-238ENST00000534296 ITGADQ13349 1161 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 CTTNQ14247 550 aaKnown RBP2.9□□□□□ -1.95
CD44-238ENST00000534296 MYBPC2Q14324 1141 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 ARHGEF6Q15052 776 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 CALCRLQ16602 461 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 MAP3K21Q5TCX8 1036 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 SLC22A25Q6T423 547 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 MAATS1Q7Z4T9 603 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 TBC1D26Q86UD7 250 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 MON1AQ86VX9 555 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 ADGRG7Q96K78 797 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 LRFN5Q96NI6 719 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 TWNKQ96RR1 684 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 YME1L1Q96TA2 773 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 MAF1Q9H063 256 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 TAOK3Q9H2K8 898 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 RETREG1Q9H6L5 497 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 JMJD4Q9H9V9 463 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 WASH6PQ9NQA3 447 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 TXLNGQ9NUQ3 528 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 IL1RAPL1Q9NZN1 696 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 OR6C3Q9NZP0 311 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 NFS1Q9Y697 457 aa2.9□□□□□ -1.95
CD44-238ENST00000534296 IGLV5-37A0A075B6J1 123 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 A0A0U1RQJ8 604 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 DYTNA2CJ06 578 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 PER2O15055 1255 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 HOXC11O43248 304 aaPredicted RBP2.89□□□□□ -1.95
CD44-238ENST00000534296 TIPRLO75663 272 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 GAGE7O76087 117 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 NDUFB4O95168 129 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 VNN2O95498 520 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 GAGE12FP0CL80 117 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 GAGE12GP0CL81 117 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 GAGE12IP0CL82 117 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 GPTP24298 496 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 MT3P25713 68 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 FMO4P31512 558 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 ARL1P40616 181 aaPredicted RBP2.89□□□□□ -1.95
CD44-238ENST00000534296 COMPP49747 757 aaPredicted RBP2.89□□□□□ -1.95
CD44-238ENST00000534296 CLCN5P51795 746 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 KRTAP10-9P60411 292 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 CYP4A11Q02928 519 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 KIF5AQ12840 1032 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 GAGE1Q13065 139 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 GAGE4Q13068 117 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 SNTA1Q13424 505 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 NEDD9Q14511 834 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 VEPH1Q14D04 833 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 RALBP1Q15311 655 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 WDR78Q5VTH9 848 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 FAM122CQ6P4D5 195 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 NR2C2APQ86WQ0 139 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 HERC6Q8IVU3 1022 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 SUGP1Q8IWZ8 645 aaKnown RBP2.89□□□□□ -1.95
CD44-238ENST00000534296 SPATA3Q8NHX4 192 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 MPP4Q96JB8 637 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 PPM1MQ96MI6 270 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 TIGD1Q96MW7 591 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 REEP2Q9BRK0 252 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 CLK4Q9HAZ1 481 aaKnown RBP2.89□□□□□ -1.95
CD44-238ENST00000534296 TLR8Q9NR97 1041 aaKnown RBP2.89□□□□□ -1.95
CD44-238ENST00000534296 PLSCR4Q9NRQ2 329 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 BABAM1Q9NWV8 329 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 OCIAD1Q9NX40 245 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 SAGE1Q9NXZ1 904 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 PDP2Q9P2J9 529 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 NDRG3Q9UGV2 375 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 CARD8Q9Y2G2 431 aa2.89□□□□□ -1.95
CD44-238ENST00000534296 LAS1LQ9Y4W2 734 aaKnown RBP2.89□□□□□ -1.95
CD44-238ENST00000534296 IGLV5-52A0A0A0MRZ9 124 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 GOLGA6L10A0A0M3HER8 536 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 CLEC18AA5D8T8 446 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 A6NLC8 198 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 SMTNL1A8MU46 457 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 KRT86O43790 486 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 MBD4O95243 580 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 ZBTB11O95625 1053 aaPredicted RBP2.88□□□□□ -1.95
CD44-238ENST00000534296 HNRNPA1P09651 372 aaKnown RBP eCLIP2.88□□□□□ -1.95
CD44-238ENST00000534296 IRF1P10914 325 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 CD72P21854 359 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 CHATP28329 748 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 TTKP33981 857 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 NR1H2P55055 460 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 NAP1L1P55209 391 aaKnown RBP2.88□□□□□ -1.95
CD44-238ENST00000534296 LMOD3Q0VAK6 560 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 COASYQ13057 564 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 KRT81Q14533 505 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 TAF11Q15544 211 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 XKR9Q5GH70 373 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 WDR45BQ5MNZ6 344 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 C9orf50Q5SZB4 431 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 INTS11Q5TA45 600 aaKnown RBP2.88□□□□□ -1.95
CD44-238ENST00000534296 C9orf57Q5W0N0 161 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms