RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 DNAJC28Q9NX36 388 aa17.4■□□□□ 0.38
PHRF1-204ENST00000532550 UVRAGQ9P2Y5 699 aa17.4■□□□□ 0.38
PHRF1-204ENST00000532550 SEPT3Q9UH03 358 aa17.4■□□□□ 0.38
PHRF1-204ENST00000532550 LCMT1Q9UIC8 334 aa17.4■□□□□ 0.38
PHRF1-204ENST00000532550 NENFQ9UMX5 172 aa17.4■□□□□ 0.38
PHRF1-204ENST00000532550 PCDHGA1Q9Y5H4 931 aa17.4■□□□□ 0.38
PHRF1-204ENST00000532550 SPEGQ15772 3267 aa17.39■□□□□ 0.38
PHRF1-204ENST00000532550 PTPRBP23467 1997 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 SPTY2D1-AS1A0A0U1RR47 76 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 SSU72P8A0A1W2PR75 194 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 NEMP2A6NFY4 417 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 CKMT2P17540 419 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 RGRP47804 291 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 SCNN1BP51168 640 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 HNRNPKP61978 463 aaKnown RBP eCLIP17.39■□□□□ 0.37
PHRF1-204ENST00000532550 POLR2LP62875 67 aaKnown RBP17.39■□□□□ 0.37
PHRF1-204ENST00000532550 SLC10A7Q0GE19 358 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 PDE1CQ14123 709 aaPredicted RBP17.39■□□□□ 0.37
PHRF1-204ENST00000532550 ZNF542PQ5EBM4 170 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 TMCO4Q5TGY1 634 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 DHRS13Q6UX07 377 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 BBS5Q8N3I7 341 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 KCTD6Q8NC69 237 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 CCDC42Q96M95 316 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 PSKH2Q96QS6 385 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 PCDH12Q9NPG4 1184 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 ABHD10Q9NUJ1 306 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 RCOR3Q9P2K3 495 aaPredicted RBP17.39■□□□□ 0.37
PHRF1-204ENST00000532550 COL5A1P20908 1838 aaPredicted RBP17.39■□□□□ 0.37
PHRF1-204ENST00000532550 AKAP13Q12802 2813 aa17.39■□□□□ 0.37
PHRF1-204ENST00000532550 TSPAN11A1L157 253 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 H3BM21 787 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 RIOK3O14730 519 aaKnown RBP17.38■□□□□ 0.37
PHRF1-204ENST00000532550 RFPL3O75679 317 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 PIAS2O75928 621 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 PROSCO94903 275 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 THOP1P52888 689 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 ADKP55263 362 aaKnown RBP17.38■□□□□ 0.37
PHRF1-204ENST00000532550 ZNF211Q13398 564 aaPredicted RBP17.38■□□□□ 0.37
PHRF1-204ENST00000532550 PTK2BQ14289 1009 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 FZD2Q14332 565 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 ZNF235Q14590 738 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 ASTE1Q2TB18 679 aaPredicted RBP17.38■□□□□ 0.37
PHRF1-204ENST00000532550 PARGQ86W56 976 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 TSC1Q92574 1164 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 PACSIN1Q9BY11 444 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 GPR27Q9NS67 375 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 UCKL1Q9NWZ5 548 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 PLXNB3Q9ULL4 1909 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 FRYQ5TBA9 3013 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 IGF2RP11717 2491 aa17.38■□□□□ 0.37
PHRF1-204ENST00000532550 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.37■□□□□ 0.37
PHRF1-204ENST00000532550 TRIM38O00635 465 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 TOR1BO14657 336 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 SIGLEC6O43699 453 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 LZTS3O60299 673 aaPredicted RBP17.37■□□□□ 0.37
PHRF1-204ENST00000532550 CSF2P04141 144 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 TMEM253P0C7T8 217 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 ALPPL2P10696 532 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 IL4RP24394 825 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 GJC1P36383 396 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 HSPA9P38646 679 aaKnown RBP17.37■□□□□ 0.37
PHRF1-204ENST00000532550 PFN3P60673 137 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 AP1S1P61966 158 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 YPEL5P62699 121 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 MMRN1Q13201 1228 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 LRRC14Q15048 493 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 SMAD1Q15797 465 aaKnown RBP17.37■□□□□ 0.37
PHRF1-204ENST00000532550 ATP13A4Q4VNC1 1196 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 ZFYVE27Q5T4F4 411 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 LRRC49Q8IUZ0 686 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 MAP7D3Q8IWC1 876 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 ATPAF2Q8N5M1 289 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 OR4C6Q8NH72 309 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 FAM71BQ8TC56 605 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 CHP1Q99653 195 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 NHEJ1Q9H9Q4 299 aaPredicted RBP17.37■□□□□ 0.37
PHRF1-204ENST00000532550 ZMIZ1Q9ULJ6 1067 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 ATP8A1Q9Y2Q0 1164 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 ANKRD36A6QL64 1941 aa17.37■□□□□ 0.37
PHRF1-204ENST00000532550 USP24Q9UPU5 2620 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 MUSKO15146 869 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 FFAR2O15552 330 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 MAFKO60675 156 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 MFAP3LO75121 409 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 KRT7P08729 469 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 CD48P09326 243 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 ACADVLP49748 655 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 LIG3P49916 1009 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 DAB2P98082 770 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 ILKQ13418 452 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 PDK2Q15119 407 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 MARC1Q5VT66 337 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 TMPRSS12Q86WS5 348 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 ZSWIM9Q86XI8 627 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 CNGA4Q8IV77 575 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 BTN2A2Q8WVV5 523 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 ZCCHC14Q8WYQ9 949 aaKnown RBP17.36■□□□□ 0.37
PHRF1-204ENST00000532550 SCUBE2Q9NQ36 999 aa17.36■□□□□ 0.37
PHRF1-204ENST00000532550 MBNL1Q9NR56 388 aaKnown RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms