RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 CREB3O43889 395 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 ANXA6P08133 673 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 TSHRP16473 764 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 ITIH2P19823 946 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 PEX5P50542 639 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 COPB1P53618 953 aaKnown RBP11.47□□□□□ -0.57
VPS28-214ENST00000531032 ADKP55263 362 aaKnown RBP11.47□□□□□ -0.57
VPS28-214ENST00000531032 TMPRSS3P57727 454 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 RPL7AP62424 266 aaKnown RBP11.47□□□□□ -0.57
VPS28-214ENST00000531032 SKOR1P84550 965 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 PPARDQ03181 441 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 ELP6Q0PNE2 266 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 C1orf61Q13536 156 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 IRF4Q15306 451 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 KLHL40Q2TBA0 621 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 C3orf38Q5JPI3 329 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 PPP1R15BQ5SWA1 713 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 BROXQ5VW32 411 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 DNAJC24Q6P3W2 148 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 SCYL2Q6P3W7 929 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 DNAAF5Q86Y56 855 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 NETO2Q8NC67 525 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 NEK11Q8NG66 645 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 WDR48Q8TAF3 677 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 KCNE4Q8WWG9 221 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 GLMNQ92990 594 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 ATXN7L3BQ96GX2 97 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 VCPIP1Q96JH7 1222 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 SLC46A1Q96NT5 459 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 MCEEQ96PE7 176 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 ERGIC2Q96RQ1 377 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 CNPY3Q9BT09 278 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 WRAP53Q9BUR4 548 aaKnown RBP11.47□□□□□ -0.57
VPS28-214ENST00000531032 DPH1Q9BZG8 443 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 CLPBQ9H078 707 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 PDFQ9HBH1 243 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 LIMA1Q9UHB6 759 aaKnown RBP11.47□□□□□ -0.57
VPS28-214ENST00000531032 SSUH2Q9Y2M2 353 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 PCDHGA8Q9Y5G5 932 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 ANKRD62A6NC57 917 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 LRRC10BA6NIK2 292 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 TMEM110-MUSTN1A8MSY1 372 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 ERVH48-1M5A8F1 160 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 YY2O15391 372 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 INSIG1O15503 277 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 PIGNO95427 931 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 MBD3O95983 291 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 CELA2BP08218 269 aaPredicted RBP11.46□□□□□ -0.57
VPS28-214ENST00000531032 HTR7P34969 479 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 BLKP51451 505 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 HK3P52790 923 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 PDX1P52945 283 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 GRM3Q14832 879 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 LRRC14Q15048 493 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 AGERQ15109 404 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 CYTH1Q15438 398 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 UGP2Q16851 508 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 WSCD2Q2TBF2 565 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 FAXCQ5TGI0 409 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 LVRNQ6Q4G3 990 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 CRTC1Q6UUV9 634 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 SASS6Q6UVJ0 657 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 FSTL5Q8N475 847 aaPredicted RBP11.46□□□□□ -0.57
VPS28-214ENST00000531032 SNRNP27Q8WVK2 155 aaKnown RBP11.46□□□□□ -0.57
VPS28-214ENST00000531032 PRR11Q96HE9 360 aaPredicted RBP11.46□□□□□ -0.57
VPS28-214ENST00000531032 EXOC2Q96KP1 924 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 AGPAT1Q99943 283 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 NCAPGQ9BPX3 1015 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 LRRC19Q9H756 370 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 PCDH12Q9NPG4 1184 aa11.46□□□□□ -0.57
VPS28-214ENST00000531032 SEPT11Q9NVA2 429 aaKnown RBP11.46□□□□□ -0.57
VPS28-214ENST00000531032 UBA2Q9UBT2 640 aaPredicted RBP11.46□□□□□ -0.57
VPS28-214ENST00000531032 CDRT15L2A8MXV6 281 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 NTN3O00634 580 aaPredicted RBP11.45□□□□□ -0.58
VPS28-214ENST00000531032 CASC3O15234 703 aaKnown RBP11.45□□□□□ -0.58
VPS28-214ENST00000531032 KLK10O43240 276 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 PRAMEF11O60813 436 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 C6P13671 934 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 XPAP23025 273 aaPredicted RBP11.45□□□□□ -0.58
VPS28-214ENST00000531032 RBMS1P29558 406 aaKnown RBP11.45□□□□□ -0.58
VPS28-214ENST00000531032 MMP12P39900 470 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 MLLT3P42568 568 aaPredicted RBP11.45□□□□□ -0.58
VPS28-214ENST00000531032 NDST2P52849 883 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 MYL5Q02045 173 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 RHDQ02161 417 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 OGDHQ02218 1023 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 NFATC4Q14934 902 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 ELOCQ15369 112 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 STX1AQ16623 288 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 ALG11Q2TAA5 492 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 ESRP1Q6NXG1 681 aaKnown RBP11.45□□□□□ -0.58
VPS28-214ENST00000531032 BRAT1Q6PJG6 821 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 MCOLN2Q8IZK6 566 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 SDR16C5Q8N3Y7 309 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 ZNF843Q8N446 348 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 ARL10Q8N8L6 244 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 ANKRD20A12PQ8NF67 263 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 PCDH19Q8TAB3 1148 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 WBP1Q96G27 269 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 PCMTD1Q96MG8 357 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms