RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 RTL10Q7L3V2 364 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 MFSD6LQ8IWD5 586 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 TDRD5Q8NAT2 981 aaKnown RBP20.86■□□□□ 0.93
VPS28-209ENST00000528142 EXOC2Q96KP1 924 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 ZNF358Q9NW07 568 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 RWDD3Q9Y3V2 267 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 GBF1Q92538 1859 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 C5orf67F2Z3F1 127 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 LEFTY2O00292 366 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 TMCC1O94876 653 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 TGDSO95455 350 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 PRLP01236 227 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 CSKP41240 450 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 ARSDP51689 593 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 IRX4P78413 519 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 BST1Q10588 318 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 OVGP1Q12889 678 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 FASTKD1Q53R41 847 aaKnown RBP20.85■□□□□ 0.93
VPS28-209ENST00000528142 MPP7Q5T2T1 576 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 ATG16L1Q676U5 607 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 SHKBP1Q8TBC3 707 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 CALML6Q8TD86 181 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 BRSK1Q8TDC3 778 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 PEX13Q92968 403 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 SCUBE2Q9NQ36 999 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 ARHGAP26Q9UNA1 814 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 ARIH1Q9Y4X5 557 aaPredicted RBP20.85■□□□□ 0.93
VPS28-209ENST00000528142 E2F8A0AVK6 867 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 ALDH3A1P30838 453 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 TMPRSS15P98073 1019 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 IRF9Q00978 393 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 CDH18Q13634 790 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 LAMB3Q13751 1172 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 FYB2Q5VWT5 728 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 RNF135Q8IUD6 432 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 DCAF4L2Q8NA75 395 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 TTC16Q8NEE8 873 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 ZNF398Q8TD17 642 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 C7orf26Q96N11 449 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 TDRD1Q9BXT4 1180 aaKnown RBP20.85■□□□□ 0.93
VPS28-209ENST00000528142 MFSD1Q9H3U5 465 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 NPHS2Q9NP85 383 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.85■□□□□ 0.93
VPS28-209ENST00000528142 LHX3Q9UBR4 397 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 VPS51Q9UID3 782 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 VPS28Q9UK41 221 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 RIMKLBQ9ULI2 386 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 CHKBQ9Y259 395 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 USH1CQ9Y6N9 552 aa20.85■□□□□ 0.93
VPS28-209ENST00000528142 SNNO75324 88 aaPredicted RBP20.84■□□□□ 0.93
VPS28-209ENST00000528142 MOSPD3O75425 235 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 RFPL2O75678 378 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 HAUS5O94927 633 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 TROVE2P10155 538 aaKnown RBP eCLIP20.84■□□□□ 0.93
VPS28-209ENST00000528142 IRS1P35568 1242 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 CD151P48509 253 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 OCRLQ01968 901 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 NSUN2Q08J23 767 aaKnown RBP eCLIP20.84■□□□□ 0.93
VPS28-209ENST00000528142 USP10Q14694 798 aaKnown RBP20.84■□□□□ 0.93
VPS28-209ENST00000528142 PCLAFQ15004 111 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 CCDC153Q494R4 210 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 GALNTL6Q49A17 601 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 MBLAC2Q68D91 279 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 MFN1Q8IWA4 741 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 FITM2Q8N6M3 262 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 BLOC1S5Q8TDH9 187 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 DDI1Q8WTU0 396 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 HDAC10Q969S8 669 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 SMG9Q9H0W8 520 aaKnown RBP20.84■□□□□ 0.93
VPS28-209ENST00000528142 ARL5AQ9Y689 179 aa20.84■□□□□ 0.93
VPS28-209ENST00000528142 AURKAO14965 403 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 LEPRP48357 1165 aaKnown RBP20.83■□□□□ 0.93
VPS28-209ENST00000528142 MPPE1Q53F39 396 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 GALNT7Q86SF2 657 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 SLC41A1Q8IVJ1 513 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 RFWD2Q8NHY2 731 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 MICAL1Q8TDZ2 1067 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 BHMTQ93088 406 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 TCEAL4Q96EI5 215 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 C1QTNF1Q9BXJ1 281 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 MAN1C1Q9NR34 630 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 COPG2Q9UBF2 871 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 ANKRD6Q9Y2G4 727 aa20.83■□□□□ 0.93
VPS28-209ENST00000528142 CCDC195A0A1B0GUA6 201 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 FAM95CA0A1B0GW59 222 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 CCL22O00626 93 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 GRM6O15303 877 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 FGF19O95750 216 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 SLC35E2BP0CK96 405 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 FGF3P11487 239 aaPredicted RBP20.83■□□□□ 0.92
VPS28-209ENST00000528142 GPR158Q5T848 1215 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 NCEH1Q6PIU2 408 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 APCDD1Q8J025 514 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 GABPB2Q8TAK5 448 aaPredicted RBP20.83■□□□□ 0.92
VPS28-209ENST00000528142 TRIM55Q9BYV6 548 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 ACTR5Q9H9F9 607 aaPredicted RBP20.83■□□□□ 0.92
VPS28-209ENST00000528142 CLEC4EQ9ULY5 219 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 SLC12A4Q9UP95 1085 aa20.83■□□□□ 0.92
VPS28-209ENST00000528142 FSBPO95073 299 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 PDHA1P08559 390 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms