RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	RPL3	P39023	403 aa	Known RBP	4.84	□□□□□ -1.63
CD44-223	ENST00000526553	MAPK9	P45984	424 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	CLCN5	P51795	746 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	ART1	P52961	327 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	NR1H2	P55055	460 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	CDH15	P55291	814 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	BNC1	Q01954	994 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	KIF5A	Q12840	1032 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	HSPB2	Q16082	182 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	PRAMEF19	Q5SWL8	479 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	CAPRIN2	Q6IMN6	1127 aa	Known RBP	4.84	□□□□□ -1.63
CD44-223	ENST00000526553	MMS22L	Q6ZRQ5	1243 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	CCDC129	Q6ZRS4	1044 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	CREB3L2	Q70SY1	520 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	TADA2B	Q86TJ2	420 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	LURAP1L	Q8IV03	231 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	PLD5	Q8N7P1	536 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	C11orf65	Q8NCR3	313 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	ZCCHC10	Q8TBK6	192 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	C6orf106	Q9H6K1	298 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-223	ENST00000526553	SNTG1	Q9NSN8	517 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	BABAM1	Q9NWV8	329 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	GGA3	Q9NZ52	723 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	OR6C3	Q9NZP0	311 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	TBX20	Q9UMR3	447 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	CARD8	Q9Y2G2	431 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	4.84	□□□□□ -1.63
CD44-223	ENST00000526553	PAM16	Q9Y3D7	125 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	IGLV5-52	A0A0A0MRZ9	124 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553		A0A0U1RQJ8	604 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	LINC01553	A4QN01	128 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	KLRF2	D3W0D1	207 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	WNT9B	O14905	357 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	VNN2	O95498	520 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	UROD	P06132	367 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	HNRNPA1	P09651	372 aa	Known RBP eCLIP	4.83	□□□□□ -1.64
CD44-223	ENST00000526553	ITGB8	P26012	769 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	CHAT	P28329	748 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	DDIT3	P35638	169 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	CLDN2	P57739	230 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	TAF11	Q15544	211 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	ESCO2	Q56NI9	601 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	TYW3	Q6IPR3	259 aa	Known RBP	4.83	□□□□□ -1.64
CD44-223	ENST00000526553	TMEM81	Q6P7N7	255 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	SLC22A25	Q6T423	547 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	C18orf65	Q6ZTR6	163 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	TCP11L2	Q8N4U5	519 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	GJC3	Q8NFK1	279 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	FIZ1	Q96SL8	496 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	MMTAG2	Q9BU76	263 aa	Known RBP	4.83	□□□□□ -1.64
CD44-223	ENST00000526553	CYSLTR2	Q9NS75	346 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	PPP1R14D	Q9NXH3	145 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	PNMA2	Q9UL42	364 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	A3GALT2	U3KPV4	340 aa		4.83	□□□□□ -1.64
CD44-223	ENST00000526553	CH25H	O95992	272 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	HEXA	P06865	529 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	POU1F1	P28069	291 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	FMO4	P31512	558 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	HDAC4	P56524	1084 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	TDG	Q13569	410 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	CAMK1	Q14012	370 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	NFATC4	Q14934	902 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	MAPRE1	Q15691	268 aa	Known RBP	4.82	□□□□□ -1.64
CD44-223	ENST00000526553	SOWAHA	Q2M3V2	549 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	CES5A	Q6NT32	575 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	GPAT4	Q86UL3	456 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	KIAA2013	Q8IYS2	634 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	ARRDC2	Q8TBH0	407 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	TMED6	Q8WW62	240 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	ZBTB10	Q96DT7	871 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	RTP4	Q96DX8	246 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	ZC3HAV1L	Q96H79	300 aa	Known RBP	4.82	□□□□□ -1.64
CD44-223	ENST00000526553	LRFN5	Q96NI6	719 aa		4.82	□□□□□ -1.64
CD44-223	ENST00000526553	TTYH1	Q9H313	450 aa	Predicted RBP	4.82	□□□□□ -1.64
CD44-223	ENST00000526553	C9orf78	Q9NZ63	289 aa	Predicted RBP	4.82	□□□□□ -1.64
CD44-223	ENST00000526553	BTBD18	B2RXH4	712 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553		J3KR12	359 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	RGS11	O94810	467 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	NDUFB4	O95168	129 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	PPP1R3D	O95685	299 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	GALT	P07902	379 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	ITGAX	P20702	1163 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	PDLIM4	P50479	330 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	TUBA1B	P68363	451 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	ARHGEF6	Q15052	776 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	GPR68	Q15743	365 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	BAK1	Q16611	211 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	C9orf57	Q5W0N0	161 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	RRM2B	Q7LG56	351 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	SHF	Q7M4L6	423 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	PARP16	Q8N5Y8	322 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	HTRA1	Q92743	480 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	MXRA8	Q9BRK3	442 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	IL25	Q9H293	177 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	WASH6P	Q9NQA3	447 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	SMYD2	Q9NRG4	433 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	PDP2	Q9P2J9	529 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	HSPB7	Q9UBY9	170 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	SLC13A4	Q9UKG4	626 aa		4.81	□□□□□ -1.64
CD44-223	ENST00000526553	PRSS44	E7EML9	344 aa		4.8	□□□□□ -1.64

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