RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.78□□□□□ -0.52
SYNPO-204ENST00000519664 ARRDC4Q8NCT1 418 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 OR56A4Q8NGH8 313 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 C12orf42Q96LP6 360 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 ZNF142P52746 1687 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-204ENST00000519664 MYO7AQ13402 2215 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 TTC24A2A3L6 582 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-204ENST00000519664 AMHP03971 560 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 CHRNGP07510 517 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 PRKAR2AP13861 404 aaKnown RBP11.78□□□□□ -0.52
SYNPO-204ENST00000519664 PTPN3P26045 913 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 PTPN9P43378 593 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 NEK2P51955 445 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 EPHB3P54753 998 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 PPIDQ08752 370 aaKnown RBP11.78□□□□□ -0.52
SYNPO-204ENST00000519664 BTG3Q14201 252 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-204ENST00000519664 GSTA3Q16772 222 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 CRYGNQ8WXF5 182 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 TEPSINQ96N21 525 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 AGO3Q9H9G7 860 aaKnown RBP11.78□□□□□ -0.52
SYNPO-204ENST00000519664 ZC4H2Q9NQZ6 224 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 IMPAD1Q9NX62 359 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 ARL15Q9NXU5 204 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 SCN3BQ9NY72 215 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 RAD54BQ9Y620 910 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 CLUHO75153 1309 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 MGAT4DA6NG13 374 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 SLC5A3P53794 718 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 TCEA2Q15560 299 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 ARL10Q8N8L6 244 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 SOCS4Q8WXH5 440 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 CAMKK2Q96RR4 588 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 AAASQ9NRG9 546 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 PIGVQ9NUD9 493 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 PTCH2Q9Y6C5 1203 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 TNFAIP8O95379 198 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 AP2A1O95782 977 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 OR1D2P34982 312 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 ELAVL2Q12926 359 aaKnown RBP11.77□□□□□ -0.52
SYNPO-204ENST00000519664 CCL14Q16627 93 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 CPSF6Q16630 551 aaKnown RBP eCLIP11.77□□□□□ -0.52
SYNPO-204ENST00000519664 CCDC142Q17RM4 750 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 TIGD2Q4W5G0 525 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 NECAB2Q7Z6G3 386 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 SYTL1Q8IYJ3 562 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 GRIN3AQ8TCU5 1115 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 C10orf82Q8WW14 230 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 SNX27Q96L92 541 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 PEBP4Q96S96 227 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 CYP2S1Q96SQ9 504 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 PCYT2Q99447 389 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 EBF2Q9HAK2 575 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 CYLDQ9NQC7 956 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 ADAM28Q9UKQ2 775 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 TRAF6Q9Y4K3 522 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 ITM2AO43736 263 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 GCATO75600 419 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 TM7SF2O76062 418 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 TBX18O95935 607 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 RFX3P48380 749 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 TAS2R39P59534 338 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 SLC25A11Q02978 314 aaKnown RBP11.77□□□□□ -0.52
SYNPO-204ENST00000519664 BCL2L1Q07817 233 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 ARHGAP1Q07960 439 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 TUSC3Q13454 348 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 TARBP2Q15633 366 aaKnown RBP11.77□□□□□ -0.52
SYNPO-204ENST00000519664 ARMC12Q5T9G4 340 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 POTEHQ6S545 545 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 LINGO4Q6UY18 593 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 DCAKDQ8WVC6 231 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 ARHGEF3Q9NR81 526 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 GMIPQ9P107 970 aa11.77□□□□□ -0.52
SYNPO-204ENST00000519664 A0A087X1B8 175 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 RAD51BO15315 384 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 PIGRP01833 764 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 HSMCR30P0CW71 290 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 HDCP19113 662 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 PBX3P40426 434 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 CCT8P50990 548 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 PGGT1BP53609 377 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 MSLNQ13421 630 aaPredicted RBP11.77□□□□□ -0.53
SYNPO-204ENST00000519664 C16orf72Q14CZ0 275 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 PITRM1Q5JRX3 1037 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 STXBP5Q5T5C0 1151 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 ZFP1Q6P2D0 407 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 ZNF621Q6ZSS3 439 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 PATL1Q86TB9 770 aaKnown RBP11.77□□□□□ -0.53
SYNPO-204ENST00000519664 SPPL2AQ8TCT8 520 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 SLCO2A1Q92959 643 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 PAIP1Q9H074 479 aaKnown RBP11.77□□□□□ -0.53
SYNPO-204ENST00000519664 DDX28Q9NUL7 540 aaKnown RBP11.77□□□□□ -0.53
SYNPO-204ENST00000519664 LRP6O75581 1613 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 KCNU1A8MYU2 1149 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 HS6ST1O60243 411 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 KRT6AP02538 564 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 KRT6BP04259 564 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 CYP2C18P33260 490 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 KRT6CP48668 564 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 NOVP48745 357 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 CLCN5P51795 746 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms