RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 DNAJC3Q13217 504 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 FZD2Q14332 565 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 RFTN1Q14699 578 aaPredicted RBP9.44□□□□□ -0.9
HDAC3-215ENST00000519474 GRM3Q14832 879 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 ST3GAL2Q16842 350 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 ZNF542PQ5EBM4 170 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 DNTTIP2Q5QJE6 756 aaKnown RBP9.44□□□□□ -0.9
HDAC3-215ENST00000519474 TPRG1LQ5T0D9 272 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 UNQ6494/PRO21346Q6UXR6 183 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 H2AFVQ71UI9 128 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 ZSCAN30Q86W11 494 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 ZSWIM9Q86XI8 627 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 SLC22A18ASQ8N1D0 253 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 IFT43Q96FT9 208 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 CNDP2Q96KP4 475 aaKnown RBP9.44□□□□□ -0.9
HDAC3-215ENST00000519474 TUBGCP5Q96RT8 1024 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 MBNL1Q9NR56 388 aaKnown RBP9.44□□□□□ -0.9
HDAC3-215ENST00000519474 UCKL1Q9NWZ5 548 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 KLF15Q9UIH9 416 aa9.44□□□□□ -0.9
HDAC3-215ENST00000519474 TDRD6O60522 2096 aaKnown RBP9.43□□□□□ -0.9
HDAC3-215ENST00000519474 SPTY2D1-AS1A0A0U1RR47 76 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 A6NNZ2 444 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 TAF4O00268 1085 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 FPGTO14772 594 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 SDC3O75056 442 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 PIAS2O75928 621 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 PROSCO94903 275 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 TPM3P06753 285 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 SCNN1BP51168 640 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 RENBPP51606 427 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 SUOXP51687 545 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 CDH6P55285 790 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 SEMG2Q02383 582 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 EIF2B5Q13144 721 aaKnown RBP9.43□□□□□ -0.9
HDAC3-215ENST00000519474 LBRQ14739 615 aaKnown RBP9.43□□□□□ -0.9
HDAC3-215ENST00000519474 HADHQ16836 314 aaKnown RBP9.43□□□□□ -0.9
HDAC3-215ENST00000519474 PGBD5Q8N414 524 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 TP53I13Q8NBR0 393 aaPredicted RBP9.43□□□□□ -0.9
HDAC3-215ENST00000519474 SLC35G2Q8TBE7 412 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 ZNF564Q8TBZ8 553 aaPredicted RBP9.43□□□□□ -0.9
HDAC3-215ENST00000519474 SNRNP27Q8WVK2 155 aaKnown RBP9.43□□□□□ -0.9
HDAC3-215ENST00000519474 ECHDC3Q96DC8 303 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 ZNF599Q96NL3 588 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 PSKH2Q96QS6 385 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 CALN1Q9BXU9 219 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 NHEJ1Q9H9Q4 299 aaPredicted RBP9.43□□□□□ -0.9
HDAC3-215ENST00000519474 PCDH12Q9NPG4 1184 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 ABHD10Q9NUJ1 306 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.43□□□□□ -0.9
HDAC3-215ENST00000519474 CTTNBP2NLQ9P2B4 639 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 UVRAGQ9P2Y5 699 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 FTSJ1Q9UET6 329 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 COQ6Q9Y2Z9 468 aa9.43□□□□□ -0.9
HDAC3-215ENST00000519474 SCAMP1O15126 338 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 SIGLEC6O43699 453 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 ZRANB2O95218 330 aaKnown RBP eCLIP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 CSF2P04141 144 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 PRKCGP05129 697 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 C1SP09871 688 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 TMEM253P0C7T8 217 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 CKMT2P17540 419 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 CR2P20023 1033 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 RABIFP47224 123 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 BCL2L1Q07817 233 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 SLC10A2Q12908 348 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 ZNF211Q13398 564 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 CAMK2BQ13554 666 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 TRIM14Q14142 442 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 DPYSL3Q14195 570 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 PAFAH1B3Q15102 231 aaKnown RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 AGERQ15109 404 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 SMAD1Q15797 465 aaKnown RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 TSR1Q2NL82 804 aaKnown RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 WSCD2Q2TBF2 565 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 PROX2Q3B8N5 592 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 CCDC157Q569K6 752 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 BRAT1Q6PJG6 821 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 TMCO3Q6UWJ1 677 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 DHRS13Q6UX07 377 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 LIPIQ6XZB0 460 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 KYAT3Q6YP21 454 aaKnown RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 CBARPQ8N350 705 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 KCTD6Q8NC69 237 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 PCDH19Q8TAB3 1148 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 CXorf40AQ8TE69 158 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 WRAP53Q9BUR4 548 aaKnown RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 CINPQ9BW66 212 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 SP110Q9HB58 689 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 ZNHIT6Q9NWK9 470 aaKnown RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 SEPT3Q9UH03 358 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 ZMIZ1Q9ULJ6 1067 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 PNMA8BQ9ULN7 279 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-215ENST00000519474 PCDHGA1Q9Y5H4 931 aa9.42□□□□□ -0.9
HDAC3-215ENST00000519474 PTPRBP23467 1997 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 CFAP69A5D8W1 941 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 FAM149AA5PLN7 773 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 TRABD2BA6NFA1 517 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 A8MX80 341 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 HTRA2O43464 458 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 AKR1B10O60218 316 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms