RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 ISCUQ9H1K1 167 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 SUV39H2Q9H5I1 410 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 ATP13A3Q9H7F0 1226 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 ZWILCHQ9H900 591 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 MYO1AQ9UBC5 1043 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 TDRD6O60522 2096 aaKnown RBP17.66■□□□□ 0.42
DDX41-217ENST00000515562 DSPP15924 2871 aaKnown RBP17.65■□□□□ 0.42
DDX41-217ENST00000515562 SYCE3A1L190 88 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 AQP9O43315 295 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 PALMO75781 387 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 NEBLO76041 1014 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 SKILP12757 684 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 SERPINA4P29622 427 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 DPYSQ14117 519 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 RTP5Q14D33 572 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 TPRG1LQ5T0D9 272 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 MACC1Q6ZN28 852 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 ARHGAP12Q8IWW6 846 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 LZTR1Q8N653 840 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 NPWQ8N729 165 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 TP53I13Q8NBR0 393 aaPredicted RBP17.65■□□□□ 0.42
DDX41-217ENST00000515562 SYN2Q92777 582 aaPredicted RBP17.65■□□□□ 0.42
DDX41-217ENST00000515562 CINPQ9BW66 212 aaPredicted RBP17.65■□□□□ 0.42
DDX41-217ENST00000515562 CBX8Q9HC52 389 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 PCDH12Q9NPG4 1184 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 SPASTQ9UBP0 616 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 APOBEC3BQ9UH17 382 aaKnown RBP17.65■□□□□ 0.42
DDX41-217ENST00000515562 LAMA5O15230 3695 aa17.65■□□□□ 0.42
DDX41-217ENST00000515562 ADAMTS20P59510 1910 aa17.64■□□□□ 0.42
DDX41-217ENST00000515562 MYLKQ15746 1914 aa17.64■□□□□ 0.42
DDX41-217ENST00000515562 A0A087WV48 116 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 H3BRJ5 948 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 DFFAO00273 331 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 TPP1O14773 563 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 MMP12P39900 470 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 FANCCQ00597 558 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 IL10RBQ08334 325 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 EIF2B5Q13144 721 aaKnown RBP17.64■□□□□ 0.41
DDX41-217ENST00000515562 LRRC14Q15048 493 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 IRF4Q15306 451 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 DPYSL2Q16555 572 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 LUZP1Q86V48 1076 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 TSEN2Q8NCE0 465 aaKnown RBP17.64■□□□□ 0.41
DDX41-217ENST00000515562 LMX1AQ8TE12 382 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 SLC13A1Q9BZW2 595 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 CAAP1Q9H8G2 361 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 CWC15Q9P013 229 aaKnown RBP17.64■□□□□ 0.41
DDX41-217ENST00000515562 KLF15Q9UIH9 416 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 ATP8A1Q9Y2Q0 1164 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 AK5Q9Y6K8 562 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 KNTC1P50748 2209 aa17.64■□□□□ 0.41
DDX41-217ENST00000515562 LY6G6EA0A0G2JKS1 128 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 OPA1O60313 960 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 MT-CO3P00414 261 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 SERPING1P05155 500 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 C6P13671 934 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 ITIH2P19823 946 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 PBX1P40424 430 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 ARL4AP40617 200 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 PEX5P50542 639 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 UBASH3AP57075 661 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 NSUN2Q08J23 767 aaKnown RBP eCLIP17.63■□□□□ 0.41
DDX41-217ENST00000515562 PIGHQ14442 188 aaPredicted RBP17.63■□□□□ 0.41
DDX41-217ENST00000515562 BOLA3Q53S33 107 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 HGSNATQ68CP4 663 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 C19orf48Q6RUI8 117 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 KDM7AQ6ZMT4 941 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 SRLQ86TD4 932 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 CAMK1DQ8IU85 385 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 PHACTR4Q8IZ21 702 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 ZNF599Q96NL3 588 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 DEPDC7Q96QD5 511 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 IL12RB2Q99665 862 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.63■□□□□ 0.41
DDX41-217ENST00000515562 MBNL1Q9NR56 388 aaKnown RBP17.63■□□□□ 0.41
DDX41-217ENST00000515562 SALL4Q9UJQ4 1053 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 U3KQA8 63 aa17.63■□□□□ 0.41
DDX41-217ENST00000515562 ZFYVE26Q68DK2 2539 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 TMEM110-MUSTN1A8MSY1 372 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 GOLGA6L19H0YKK7 550 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 EIF4A3P38919 411 aaKnown RBP17.62■□□□□ 0.41
DDX41-217ENST00000515562 RGRP47804 291 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 BLKP51451 505 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 RENBPP51606 427 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 AP1S1P61966 158 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 ZBED6P86452 979 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 BCL2L1Q07817 233 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 AGERQ15109 404 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 SMTNL2Q2TAL5 461 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 COL28A1Q2UY09 1125 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 DEFB133Q30KQ1 61 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 PRRT3Q5FWE3 981 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 TMCO4Q5TGY1 634 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 TMCO3Q6UWJ1 677 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 RBFAQ8N0V3 343 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 PAF1Q8N7H5 531 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 NIPA2Q8N8Q9 360 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 IFI44Q8TCB0 444 aa17.62■□□□□ 0.41
DDX41-217ENST00000515562 HNRNPLLQ8WVV9 542 aaKnown RBP17.62■□□□□ 0.41
DDX41-217ENST00000515562 GLMNQ92990 594 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms