RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 CNTN4Q8IWV2 1026 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 MPP5Q8N3R9 675 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 EFHBQ8N7U6 833 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 JOSD2Q8TAC2 188 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 HIC2Q96JB3 615 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 ZNF668Q96K58 619 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 CSF3RQ99062 836 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 RAB6CQ9H0N0 254 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 ABCG4Q9H172 646 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 ARNT2Q9HBZ2 717 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 XAB2Q9HCS7 855 aaKnown RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 MARCH5Q9NX47 278 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 TJP2Q9UDY2 1190 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 KIAA1257Q9ULG3 409 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 HEMK1Q9Y5R4 338 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 TMX2-CTNND1H3BSU7 103 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 FBP2O00757 339 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ZFC3H1O60293 1989 aaKnown RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 SEC14L2O76054 403 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 KLHL2O95198 593 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 PTPN1P18031 435 aaKnown RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 CD68P34810 354 aaPredicted RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 RANBP1P43487 201 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 INCA1Q0VD86 236 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 MRPL58Q14197 206 aaKnown RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 NFE2Q16621 373 aaPredicted RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 DUSP6Q16828 381 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ANKDD1AQ495B1 522 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 WDR44Q5JSH3 913 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 TCERG1LQ5VWI1 586 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 TRMT10BQ6PF06 316 aaKnown RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 C16orf54Q6UWD8 224 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 SLC16A12Q6ZSM3 486 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ARHGAP24Q8N264 748 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 DDI1Q8WTU0 396 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 DLG3Q92796 817 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 LPPQ93052 612 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 GFM2Q969S9 779 aaKnown RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 NT5C3BQ969T7 300 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 FAM161BQ96MY7 647 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 NECTIN4Q96NY8 510 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 APOL6Q9BWW8 343 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 SLC7A5P2Q9GIP4 190 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ZBTB26Q9HCK0 441 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 AP4B1Q9Y6B7 739 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 PLXNB3Q9ULL4 1909 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 A0A0G2JND7 137 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 C2CD4BA6NLJ0 364 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 RGS13O14921 159 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 PIAS1O75925 651 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 DDHD2O94830 711 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 HLA-DRAP01903 254 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 COX4I1P13073 169 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 TNNI1P19237 187 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 CD247P20963 164 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 AKAP5P24588 427 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 PHBP35232 272 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 THOP1P52888 689 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 TRAP1Q12931 704 aaKnown RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 TAF5Q15542 800 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 TMEM95Q3KNT9 176 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ZBTB41Q5SVQ8 909 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 C16orf46Q6P387 395 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 CCBE1Q6UXH8 406 aaPredicted RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ANKMY2Q8IV38 441 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 TRIM42Q8IWZ5 723 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 PALM2Q8IXS6 379 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 PGAM4Q8N0Y7 254 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 PACRGLQ8N7B6 248 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 OR13F1Q8NGS4 319 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ISG20Q96AZ6 181 aaKnown RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ISOC1Q96CN7 298 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 FUBP3Q96I24 572 aaKnown RBP eCLIP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 EBNA1BP2Q99848 306 aaKnown RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 TUBA1CQ9BQE3 449 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 PI4K2AQ9BTU6 479 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 OSBPL6Q9BZF3 934 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 OSBPL2Q9H1P3 480 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 GPN2Q9H9Y4 310 aaPredicted RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 AKIP1Q9NQ31 210 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 AK5Q9Y6K8 562 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 SLC30A1Q9Y6M5 507 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ZFP37Q9Y6Q3 630 aaPredicted RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ATG2AQ2TAZ0 1938 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 CCDC163A0A0D9SF12 145 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 FUOMA2VDF0 154 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 UPK1AO00322 258 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 HUS1O60921 280 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 MICAL2O94851 1124 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 H6PDO95479 791 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 POMCP01189 267 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ITGB1P05556 798 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 HDAC4P56524 1084 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ADARB1P78563 741 aaKnown RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 KLF10Q13118 480 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 EIF4EBP2Q13542 120 aaPredicted RBP7.48□□□□□ -1.21
CLIP1-205ENST00000514271 RAB33AQ14088 237 aa7.48□□□□□ -1.21
CLIP1-205ENST00000514271 ANKRD26P1Q6NSI1 321 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms