RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 GPR156Q8NFN8 814 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 ARHGEF2Q92974 986 aaKnown RBP20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 HAPLN3Q96S86 360 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 CMKLR1Q99788 373 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 SEMA6CQ9H3T2 930 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 DNAI1Q9UI46 699 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 OR1A2Q9Y585 309 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 ZFC3H1O60293 1989 aaKnown RBP20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 A0A1W2PQC6 194 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 GSRP00390 522 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 PNMA6AP0CW24 399 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 TIMP2P16035 220 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 BMP6P22004 513 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 PTK2Q05397 1052 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 WSCD2Q2TBF2 565 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 FAM102AQ5T9C2 384 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 TRNP1Q6NT89 227 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 SLC47A2Q86VL8 602 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 ZDHHC17Q8IUH5 632 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 OR6C4Q8NGE1 309 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 ZNF564Q8TBZ8 553 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 SHC3Q92529 594 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 OSBPL1AQ9BXW6 950 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 AJAP1Q9UKB5 411 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 APPL1Q9UKG1 709 aa20.54■□□□□ 0.88
SQSTM1-215ENST00000514093 GNA14O95837 355 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 FLT3P36888 993 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 PEX5P50542 639 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 MARSP56192 900 aaKnown RBP20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 INPP5AQ14642 412 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 NFATC4Q14934 902 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 C16orf72Q14CZ0 275 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 LRRC14Q15048 493 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 C2CD6Q53TS8 623 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 CREBRFQ8IUR6 639 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 TMEM159Q96B96 161 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 CFAP57Q96MR6 1250 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 APOOQ9BUR5 198 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 SLC12A9Q9BXP2 914 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 KLQ9UEF7 1012 aa20.53■□□□□ 0.88
SQSTM1-215ENST00000514093 BICDL2A1A5D9 508 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 TMEM110-MUSTN1A8MSY1 372 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 TNFP01375 233 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 CCL4P13236 92 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 GLB1P16278 677 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 HTR1BP28222 390 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 RAB6CQ53S08 254 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 CERCAMQ5T4B2 595 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 ACBD5Q5T8D3 534 aaPredicted RBP20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 RWDD4Q6NW29 188 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 SPRED1Q7Z699 444 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 SLITRK4Q8IW52 837 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 FAM46DQ8NEK8 389 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 PDXPQ96GD0 296 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 MAGEB5Q9BZ81 275 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 RAB6CQ9H0N0 254 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 RDH14Q9HBH5 336 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 LRIT1Q9P2V4 623 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 PPARGC1AQ9UBK2 798 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 APEX2Q9UBZ4 518 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 ATP6V1DQ9Y5K8 247 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 TEX15Q9BXT5 2789 aa20.52■□□□□ 0.88
SQSTM1-215ENST00000514093 GOLGA8SH3BPF8 625 aa20.51■□□□□ 0.87
SQSTM1-215ENST00000514093 CR2P20023 1033 aa20.51■□□□□ 0.87
SQSTM1-215ENST00000514093 CLCN1P35523 988 aa20.51■□□□□ 0.87
SQSTM1-215ENST00000514093 PPP1R2P41236 205 aa20.51■□□□□ 0.87
SQSTM1-215ENST00000514093 BORAQ6PGQ7 559 aa20.51■□□□□ 0.87
SQSTM1-215ENST00000514093 TAF8Q7Z7C8 310 aa20.51■□□□□ 0.87
SQSTM1-215ENST00000514093 FAM81BQ96LP2 452 aa20.51■□□□□ 0.87
SQSTM1-215ENST00000514093 RBM15Q96T37 977 aaKnown RBP eCLIP20.51■□□□□ 0.871e-7■■□□□ 13.5
SQSTM1-215ENST00000514093 CHD5Q8TDI0 1954 aa20.51■□□□□ 0.87
SQSTM1-215ENST00000514093 B4DGG1 531 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 FOXN3O00409 490 aaPredicted RBP20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 BIN1O00499 593 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 INSIG1O15503 277 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 PCCBP05166 539 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 ETFBP38117 255 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 POLE2P56282 527 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 GEMIN4P57678 1058 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 FOXK1P85037 733 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 KCNAB2Q13303 367 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 ARHGEF7Q14155 803 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 TMEM52BQ4KMG9 183 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 TMEM164Q5U3C3 297 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 OGFOD3Q6PK18 319 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 XYLT1Q86Y38 959 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 RCBTB1Q8NDN9 531 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 OR1E3Q8WZA6 343 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 PMEPA1Q969W9 287 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 C18orf8Q96DM3 657 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 WDR92Q96MX6 357 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 PDCL3Q9H2J4 239 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 ADNPQ9H2P0 1102 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 MRPL40Q9NQ50 206 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 OR12D3Q9UGF7 316 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 HOOK1Q9UJC3 728 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 HPCAL4Q9UM19 191 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 LRRK2Q5S007 2527 aa20.5■□□□□ 0.87
SQSTM1-215ENST00000514093 LRP4O75096 1905 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 GOLGA6L4A6NEF3 574 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms