RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 PPP1R16AQ96I34 528 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 HSPA12BQ96MM6 686 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 MYOCQ99972 504 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 TDRD1Q9BXT4 1180 aaKnown RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 OSBPL1AQ9BXW6 950 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 FAM126AQ9BYI3 521 aaPredicted RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 BTBD1Q9H0C5 482 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 SUV39H2Q9H5I1 410 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 USP29Q9HBJ7 922 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 WSB2Q9NYS7 404 aaPredicted RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 ZNF148Q9UQR1 794 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 CHKBQ9Y259 395 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 NCKAP1Q9Y2A7 1128 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 PCDHGA2Q9Y5H1 932 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 SAR1BQ9Y6B6 198 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 CEP192Q8TEP8 1941 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 PLXNA2O75051 1894 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 TNRC6BQ9UPQ9 1833 aaKnown RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 THADAQ6YHU6 1953 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 MYLKQ15746 1914 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 ABCA7Q8IZY2 2146 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 UPK3BL1B0FP48 263 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 UPK3BL2E5RIL1 263 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 TRAFD1O14545 582 aaPredicted RBP9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 SNPHO15079 494 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 PLRG1O43660 514 aaKnown RBP9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 NDUFS2O75306 463 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 PMPCBO75439 489 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 FSBPO95073 299 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 IFNB1P01574 187 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 IGLV3-19P01714 112 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 PDHA1P08559 390 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 TIMP2P16035 220 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 MAT2AP31153 395 aaKnown RBP9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 PTGER3P43115 390 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 VPS41P49754 854 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 TERF1P54274 439 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 NSUN2Q08J23 767 aaKnown RBP eCLIP9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 CCDC6Q16204 474 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 PLK5Q496M5 336 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 ANKRD20A2Q5SQ80 823 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 ANKRD20A1Q5TYW2 823 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 ANKRD20A3Q5VUR7 823 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 SEL1L3Q68CR1 1132 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 PMS2CLQ68D20 193 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 ALG1LQ6GMV1 187 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 FBXL19Q6PCT2 694 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 USP30Q70CQ3 517 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 CREG2Q8IUH2 290 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 SLC41A1Q8IVJ1 513 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 LPCAT1Q8NF37 534 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 IPMKQ8NFU5 416 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 ACTRT1Q8TDG2 376 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 UBE2Q2Q8WVN8 375 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 ECHDC3Q96DC8 303 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 IMP4Q96G21 291 aaKnown RBP9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 SPATA13Q96N96 652 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 TUBGCP5Q96RT8 1024 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 PRRX2Q99811 253 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 WRAP53Q9BUR4 548 aaKnown RBP9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 MLPHQ9BV36 600 aaPredicted RBP9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 CPEB1Q9BZB8 566 aaKnown RBP9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 SLC25A51Q9H1U9 297 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 GBA3Q9H227 469 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 PCDH12Q9NPG4 1184 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 FZD4Q9ULV1 537 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 SCML1Q9UN30 329 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 SMG5Q9UPR3 1016 aaKnown RBP9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 PCDHB9Q9Y5E1 797 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 SLCO1B1Q9Y6L6 691 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 CACNA1HO95180 2353 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 LAMA1P25391 3075 aa9.88□□□□□ -0.83
TOPBP1-209ENST00000513818 LRRK1Q38SD2 2015 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 TSPAN11A1L157 253 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 POM121CA8CG34 1229 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 CES2O00748 559 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 MTSS1O43312 755 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 HTRA2O43464 458 aaPredicted RBP9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 RNGTTO60942 597 aaKnown RBP9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 PHF2O75151 1096 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 SOCS5O75159 536 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 STK10O94804 968 aaKnown RBP9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 PGLSO95336 258 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 METTL18O95568 372 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 SLC4A1P02730 911 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 SERPINF2P08697 491 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 ALPIP09923 528 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 PIRTP0C851 137 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 PRLRP16471 622 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 XPAP23025 273 aaPredicted RBP9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 MAOBP27338 520 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 DEKP35659 375 aaKnown RBP9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 CHRNA4P43681 627 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 MAPK8P45983 427 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 DHPSP49366 369 aaPredicted RBP9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 SPARCL1Q14515 664 aa9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 TRIP13Q15645 432 aaPredicted RBP9.87□□□□□ -0.83
TOPBP1-209ENST00000513818 CCNG2Q16589 344 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms