RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 TMPRSS4Q9NRS4 437 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 SAGE1Q9NXZ1 904 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 MARCOQ9UEW3 520 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 YIPF1Q9Y548 306 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 PHLPP1O60346 1717 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 A0A096LPK6 155 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 GLYATL1P3A0A0U1RQE8 302 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 SERPINI2O75830 405 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 FGF18O76093 207 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ZNF682O95780 498 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 NDST3O95803 873 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 SERPINE1P05121 402 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ALAS2P22557 587 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 CLK1P49759 484 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 VEGFBP49765 207 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 NEK3P51956 506 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 STXBP1P61764 594 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 FOXM1Q08050 763 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 LGALS3BPQ08380 585 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 PTPRNQ16849 979 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TRIM71Q2Q1W2 868 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 FAM98BQ52LJ0 330 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 XKR6Q5GH73 641 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 EMC10Q5UCC4 262 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 CDC73Q6P1J9 531 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 FGD2Q7Z6J4 655 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 LIX1Q8N485 282 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 LCN9Q8WX39 176 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 FAM111AQ96PZ2 611 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 PAFAH2Q99487 392 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 KLF6Q99612 283 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 HSD17B14Q9BPX1 270 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 UGT2B28Q9BY64 529 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 IRX2Q9BZI1 471 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 ZCWPW1Q9H0M4 648 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 NSUN3Q9H649 340 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 CAAP1Q9H8G2 361 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ETNK2Q9NVF9 386 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 EVLQ9UI08 416 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 ERVK-11Q9UQG0 969 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 CPED1A4D0V7 1026 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 B2RBV5 119 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TMEM150CB9EJG8 249 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 NR5A2O00482 541 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TLX3O43711 291 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 ABCB1P08183 1280 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 SLC35G6P0C7Q6 338 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 CHN1P15882 459 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 CTPS1P17812 591 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 RBMS1P29558 406 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 MDH1P40925 334 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 CRYMQ14894 314 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 C2CD6Q53TS8 623 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 GDF6Q6KF10 455 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 PTF1AQ7RTS3 328 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 POLNQ7Z5Q5 900 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 DNAJB7Q7Z6W7 309 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 DNAAF5Q86Y56 855 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ARID3BQ8IVW6 561 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 CCDC33Q8N5R6 958 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 OR10H5Q8NGA6 315 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 OR4L1Q8NH43 312 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 STK32AQ8WU08 396 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 HMGB4Q8WW32 186 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ERLEC1Q96DZ1 483 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 PURBQ96QR8 312 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 PRMT1Q99873 361 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 MRPL45Q9BRJ2 306 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 TAPBPLQ9BX59 468 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 NRDE2Q9H7Z3 1164 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 BLOC1S4Q9NUP1 217 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 KLQ9UEF7 1012 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 C19orf25Q9UFG5 118 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 ZNF214Q9UL59 606 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 EDDM13A0A1B0GTR0 161 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TMEM120BA0PK00 339 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 WDR27A2RRH5 827 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 PRR5-ARHGAP8B1AHC4 643 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 CLDN5O00501 218 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 RARAP10276 462 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ITPKBP27987 946 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 S100GP29377 79 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 CCND3P30281 292 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 MC4RP32245 332 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 SSR2P43308 183 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 PRKAG1P54619 331 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 GNA12Q03113 381 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 MIIPQ5JXC2 388 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 GALNT7Q86SF2 657 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 RASGRP3Q8IV61 690 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 MIER2Q8N344 545 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 AADATQ8N5Z0 425 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 RP9Q8TA86 221 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 PPP1R13LQ8WUF5 828 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 GFM2Q969S9 779 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 NSMCE2Q96MF7 247 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ACE2Q9BYF1 805 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 RSPH9Q9H1X1 276 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 RIBC2Q9H4K1 309 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 DHX33Q9H6R0 707 aaKnown RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms