RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ZBTB46Q86UZ6 589 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 SPPL2CQ8IUH8 684 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 ZNF276Q8N554 614 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 LPCAT1Q8NF37 534 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 OR2T34Q8NGX1 318 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 OR2T3Q8NH03 318 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 PPTC7Q8NI37 304 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 MYLPFQ96A32 169 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 DACT3Q96B18 629 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 CDCA5Q96FF9 252 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 PLEKHG4BQ96PX9 1271 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 DPY30Q9C005 99 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 CFAP99D6REC4 459 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 HS6ST1O60243 411 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 ETV4P43268 484 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 RECQLP46063 649 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 POLD2P49005 469 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 CCT8P50990 548 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 PPIL2Q13356 520 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 PCBP1Q15365 356 aaKnown RBP eCLIP8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 NADK2Q4G0N4 442 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 INTS6LQ5JSJ4 861 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 TLK2Q86UE8 772 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 SLC35F5Q8WV83 523 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 HOPXQ9BPY8 73 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 DGCR6LQ9BY27 220 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 PDLIM7Q9NR12 457 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 LEF1Q9UJU2 399 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 MFHAS1Q9Y4C4 1052 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 SNX10Q9Y5X0 201 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 PTCH2Q9Y6C5 1203 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 STX16-NPEPL1H3BU86 382 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 SLC22A2O15244 555 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 SPTLC1O15269 473 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 LRIG2O94898 1065 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 ATG7O95352 703 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 MT-CYBP00156 380 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 DHRS4L1P0CG22 281 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 PSMD7P51665 324 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 TAS2R39P59534 338 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 ITGADQ13349 1161 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 CLEC6AQ6EIG7 209 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 DCLRE1AQ6PJP8 1040 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 SFRP1Q8N474 314 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 TMEM174Q8WUU8 243 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 HEXDCQ8WVB3 486 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 SNX27Q96L92 541 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 FCRL2Q96LA5 508 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 HNRNPABQ99729 332 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 MTG1Q9BT17 334 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 CLPBQ9H078 707 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 KLHL25Q9H0H3 589 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 PCDHAC1Q9H158 963 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 MPP6Q9NZW5 540 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 MYH11P35749 1972 aa8.46□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM149AA5PLN7 773 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 H3BNX3 289 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 ENDOD1O94919 500 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 PARNO95453 639 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 GUCA1CO95843 209 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 PSMB9P28065 219 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 TKTP29401 623 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 OLIG2Q13516 323 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 NFE2Q16621 373 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 HECTD2Q5U5R9 776 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 ARMC3Q5W041 872 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 IL27RAQ6UWB1 636 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 C8orf59Q8N0T1 100 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 CBR4Q8N4T8 237 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 OR9Q1Q8NGQ5 310 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 FBXO27Q8NI29 283 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 FBXO30Q8TB52 745 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 GIPC3Q8TF64 312 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 C19orf60Q96EN9 201 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 GMLQ99445 158 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 C1orf50Q9BV19 199 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 POLR1EQ9GZS1 481 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 RMND5AQ9H871 391 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 SQORQ9Y6N5 450 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 MYH1P12882 1939 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 KPNA4O00629 521 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 ZNF197O14709 1029 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 RNASEH1O60930 286 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 ALDOAP04075 364 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 COL1A2P08123 1366 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 DARSP14868 501 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 TPP2P29144 1249 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 TARBP2Q15633 366 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 VPS26BQ4G0F5 336 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 GPSM1Q86YR5 675 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 LRRC49Q8IUZ0 686 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 EID3Q8N140 333 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 AHI1Q8N157 1196 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 GPC2Q8N158 579 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 TEKT5Q96M29 485 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 TBCDQ9BTW9 1192 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 MKS1Q9NXB0 559 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 ZMYM5Q9UJ78 669 aa8.46□□□□□ -1.06
LIMCH1-216ENST00000512820 FADS3Q9Y5Q0 445 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms