RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 CADM4Q8NFZ8 388 aa12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 ACTRT1Q8TDG2 376 aa12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 COG1Q8WTW3 980 aa12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 ATG4AQ8WYN0 398 aa12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 ECHDC3Q96DC8 303 aa12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 NAP1L3Q99457 506 aaPredicted RBP12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 CEP41Q9BYV8 373 aa12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 DUSP15Q9H1R2 295 aaPredicted RBP12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 SLC25A51Q9H1U9 297 aa12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 GLOD4Q9HC38 313 aa12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 HOMER3Q9NSC5 361 aa12.02□□□□□ -0.49
PDLIM5-208ENST00000504489 CFAP69A5D8W1 941 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 C5orf60A6NFR6 353 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 LRRC72A6NJI9 287 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 C10orf142B7Z368 130 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 FANCGO15287 622 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 KCNN4O15554 427 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 AP1G1O43747 822 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 STK10O94804 968 aaKnown RBP12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 RHOBTB1O94844 696 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 SEMA4FO95754 770 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 MMP2P08253 660 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 SERPINF2P08697 491 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 ADRB3P13945 408 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 TIMP2P16035 220 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 STIP1P31948 543 aaKnown RBP12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 CD68P34810 354 aaPredicted RBP12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 ADPRHP54922 357 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 TAS2R38P59533 333 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 POLR2LP62875 67 aaKnown RBP12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 RPL6Q02878 288 aaKnown RBP12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 IHHQ14623 411 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 ELF2Q15723 593 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 PROX2Q3B8N5 592 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 PLK5Q496M5 336 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 PMS2CLQ68D20 193 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 NEK5Q6P3R8 708 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 PARS2Q7L3T8 475 aaKnown RBP12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 LPCAT2Q7L5N7 544 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 PID1Q7Z2X4 250 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 OR2T34Q8NGX1 318 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 OR14C36Q8NHC7 312 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 C1orf54Q8WWF1 131 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 TADA1Q96BN2 335 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 IMP4Q96G21 291 aaKnown RBP12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 MS4A14Q96JA4 679 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 GPR174Q9BXC1 333 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 C10orf88Q9H8K7 445 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 KLHL8Q9P2G9 620 aaPredicted RBP12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 DRG1Q9Y295 367 aaKnown RBP12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 TTLL3Q9Y4R7 772 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 PCDHGC4Q9Y5F7 938 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 SAR1BQ9Y6B6 198 aa12.01□□□□□ -0.49
PDLIM5-208ENST00000504489 ZNF106Q9H2Y7 1883 aaKnown RBP12□□□□□ -0.49
PDLIM5-208ENST00000504489 METTL12A8MUP2 240 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 UPK3BL1B0FP48 263 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 UPK3BL2E5RIL1 263 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 PROB1E7EW31 1015 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 PGRMC1O00264 195 aaKnown RBP12□□□□□ -0.49
PDLIM5-208ENST00000504489 AREL1O15033 823 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 ZNF185O15231 689 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 OPHN1O60890 802 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 GCATO75600 419 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 PGLSO95336 258 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 ITGAVP06756 1048 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 CA4P22748 312 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 CASQ1P31415 396 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 CD86P42081 329 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 SKOR1P84550 965 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 TRAF2Q12933 501 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 UGP2Q16851 508 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 ANKRD20A2Q5SQ80 823 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 CFAP58Q5T655 872 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 ANKRD20A1Q5TYW2 823 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 ANKRD20A3Q5VUR7 823 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 ITPRIPL1Q6GPH6 555 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 PRR23BQ6ZRT6 265 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 TTC7BQ86TV6 843 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 PRPF39Q86UA1 669 aaKnown RBP12□□□□□ -0.49
PDLIM5-208ENST00000504489 ZSWIM9Q86XI8 627 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 PRELID2Q8N945 189 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 SUMF1Q8NBK3 374 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 FOXJ1Q92949 421 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 RTP4Q96DX8 246 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 LOXL4Q96JB6 756 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 SPATA13Q96N96 652 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 FCRL5Q96RD9 977 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 TMEM121Q9BTD3 319 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 PREBQ9HCU5 417 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 FAM86C1Q9NVL1 165 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 RAPGEFL1Q9UHV5 662 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 RABGEF1Q9UJ41 708 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 RAB23Q9ULC3 237 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 TPX2Q9ULW0 747 aaKnown RBP12□□□□□ -0.49
PDLIM5-208ENST00000504489 RAI2Q9Y5P3 530 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 FADS3Q9Y5Q0 445 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 FAM186AA6NE01 2351 aa12□□□□□ -0.49
PDLIM5-208ENST00000504489 TBC1D3DA0A087WVF3 549 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TBC1D3IA0A087WXS9 549 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TBC1D3EA0A087X179 549 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms