RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 EVX2Q03828 476 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 CDK18Q07002 472 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 FAM187BQ17R55 369 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 HEATR4Q86WZ0 1026 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 DEC1Q9P2X7 70 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 N6AMT1Q9Y5N5 214 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 ARHGEF28Q8N1W1 1705 aaKnown RBP13.23□□□□□ -0.29
PTPRF-215ENST00000496447 C15orf38-AP3S2A0A0A6YYH1 394 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 PAGE1O75459 146 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 PSMG1O95456 288 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 ALADP13716 330 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 KELP23276 732 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 CRATP43155 626 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 TBX2Q13207 712 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-215ENST00000496447 PPP1R15BQ5SWA1 713 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 ARPINQ7Z6K5 226 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 MFSD14AQ96MC6 490 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 CERS4Q9HA82 394 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 OR10H1Q9Y4A9 318 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 KLRC4O43908 158 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 OR4Q2P0C623 313 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 HNF4AP41235 474 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 VSTM1Q6UX27 236 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 ALLCQ8N6M5 410 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 PGM2Q96G03 612 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 RNF145Q96MT1 663 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 TMEM237Q96Q45 408 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 TBCDQ9BTW9 1192 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 PCDHB9Q9Y5E1 797 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 GCATO75600 419 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 ADRA1DP25100 572 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 GRM3Q14832 879 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 RGS21Q2M5E4 152 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 OTUD3Q5T2D3 398 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-215ENST00000496447 TMEM63BQ5T3F8 832 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 CRTC3Q6UUV7 619 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 PAGE2Q7Z2X7 111 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 CFAP52Q8N1V2 620 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 WDR36Q8NI36 951 aaKnown RBP13.23□□□□□ -0.29
PTPRF-215ENST00000496447 RMND5BQ96G75 393 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-215ENST00000496447 LGMNQ99538 433 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 RPRD1BQ9NQG5 326 aaKnown RBP13.23□□□□□ -0.29
PTPRF-215ENST00000496447 COPG2Q9UBF2 871 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 KCNH1O95259 989 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 LBPP18428 481 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 GSSP48637 474 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 MPPE1Q53F39 396 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 SNX32Q86XE0 403 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 FAM20CQ8IXL6 584 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 ST13P5Q8NFI4 369 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-215ENST00000496447 MCCC1Q96RQ3 725 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-215ENST00000496447 ZNF232Q9UNY5 417 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 MAPRE3Q9UPY8 281 aa13.23□□□□□ -0.29
PTPRF-215ENST00000496447 OPLAHO14841 1288 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 RPL22P35268 128 aaKnown RBP13.22□□□□□ -0.29
PTPRF-215ENST00000496447 PTDSS1P48651 473 aaKnown RBP13.22□□□□□ -0.29
PTPRF-215ENST00000496447 AIF1P55008 147 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 IL17AQ16552 155 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 XKR6Q5GH73 641 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 ATAD1Q8NBU5 361 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 OR6K2Q8NGY2 324 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 PPP1R14BQ96C90 147 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 MYO19Q96H55 970 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 PLK2Q9NYY3 685 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 LSM1O15116 133 aaKnown RBP13.22□□□□□ -0.29
PTPRF-215ENST00000496447 CLDN11O75508 207 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 NFATC1O95644 943 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 LDLRP01130 860 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 CHN2P52757 468 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 TAF13Q15543 124 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 TCHHL1Q5QJ38 904 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-215ENST00000496447 FAM151BQ6UXP7 276 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 GMIPQ9P107 970 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 VAV3Q9UKW4 847 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 ASF1AQ9Y294 204 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 PCDHGC5Q9Y5F6 944 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 MSI1O43347 362 aaKnown RBP13.22□□□□□ -0.29
PTPRF-215ENST00000496447 FGF1P05230 155 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 ZNF75CPQ92670 426 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-215ENST00000496447 COPS8Q99627 209 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 OXCT2Q9BYC2 517 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-215ENST00000496447 FFAR3O14843 346 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 GPR42O15529 346 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 MLYCDO95822 493 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 FAM153BP0C7A2 387 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 TRIM71Q2Q1W2 868 aaKnown RBP13.22□□□□□ -0.29
PTPRF-215ENST00000496447 FAM153CQ494X1 144 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 MIIPQ5JXC2 388 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 C16orf62Q7Z3J2 963 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 ZCCHC7Q8N3Z6 543 aaKnown RBP13.22□□□□□ -0.29
PTPRF-215ENST00000496447 POU5F2Q8N7G0 328 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 ITFG1Q8TB96 612 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 BTN2A3PQ96KV6 586 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 FANCEQ9HB96 536 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 GALNT8Q9NY28 637 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 ADAM30Q9UKF2 790 aa13.22□□□□□ -0.29
PTPRF-215ENST00000496447 PPIEQ9UNP9 301 aaKnown RBP13.22□□□□□ -0.29
PTPRF-215ENST00000496447 NCANO14594 1321 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 DCXO43602 365 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 HIST1H2ABP04908 130 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 334.9 ms