RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CGNL1Q0VF96 1302 aa3.92□□□□□ -1.78
VPS50-219ENST00000495039 TP53BP1Q12888 1972 aaPredicted RBP3.91□□□□□ -1.78
VPS50-219ENST00000495039 A0A0G2JPF8 293 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 HNRNPCL3B7ZW38 293 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 HNRNPCL1O60812 293 aaKnown RBP3.91□□□□□ -1.78
VPS50-219ENST00000495039 TCEA3O75764 348 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 TNFRSF6BO95407 300 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 ITGA2BP08514 1039 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 HNRNPCL4P0DMR1 293 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 AZU1P20160 251 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 CHKAP35790 457 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 SERPINF1P36955 418 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 GALNT1Q10472 559 aaPredicted RBP3.91□□□□□ -1.78
VPS50-219ENST00000495039 ZNF155Q12901 538 aaPredicted RBP3.91□□□□□ -1.78
VPS50-219ENST00000495039 CAPSQ13938 189 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 GRAMD1BQ3KR37 738 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 FAM122CQ6P4D5 195 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 RAB11FIP2Q7L804 512 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 CCDC117Q8IWD4 279 aaPredicted RBP3.91□□□□□ -1.78
VPS50-219ENST00000495039 DMBX1Q8NFW5 382 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 OTUD7AQ8TE49 926 aaPredicted RBP3.91□□□□□ -1.78
VPS50-219ENST00000495039 CPT1BQ92523 772 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 EID2BQ96D98 161 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 RMDN3Q96TC7 470 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 RTKNQ9BST9 563 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 CXorf56Q9H5V9 222 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 LRRC4Q9HBW1 653 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 ABCF3Q9NUQ8 709 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 RCE1Q9Y256 329 aa3.91□□□□□ -1.78
VPS50-219ENST00000495039 A0A1W2PS18 150 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 OR6C68A6NDL8 312 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 SYT5O00445 386 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 IFRD1O00458 451 aaPredicted RBP3.9□□□□□ -1.79
VPS50-219ENST00000495039 TPD52L2O43399 206 aaKnown RBP3.9□□□□□ -1.79
VPS50-219ENST00000495039 ALDH4A1P30038 563 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 AVPR2P30518 371 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 LINC01547P58512 204 aaPredicted RBP3.9□□□□□ -1.79
VPS50-219ENST00000495039 DCTN1Q14203 1278 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 RPS6KA2Q15349 733 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 OASLQ15646 514 aaKnown RBP3.9□□□□□ -1.79
VPS50-219ENST00000495039 GALNTL6Q49A17 601 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 NAPEPLDQ6IQ20 393 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 ARHGAP11AQ6P4F7 1023 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 KLHL17Q6TDP4 642 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 SLC9B2Q86UD5 537 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 PTGR2Q8N8N7 351 aaPredicted RBP3.9□□□□□ -1.79
VPS50-219ENST00000495039 RASSF8Q8NHQ8 419 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 CCT6BQ92526 530 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 TMEM19Q96HH6 336 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 TTC14Q96N46 770 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 CSF3RQ99062 836 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 PAGR1Q9BTK6 254 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 KATNAL1Q9BW62 490 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 PPCSQ9HAB8 311 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 TMLHEQ9NVH6 421 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 TAAR2Q9P1P5 351 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 DAPP1Q9UN19 280 aa3.9□□□□□ -1.79
VPS50-219ENST00000495039 C19orf53Q9UNZ5 99 aaPredicted RBP3.9□□□□□ -1.79
VPS50-219ENST00000495039 C17orf100A8MU93 164 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 ACKR2O00590 384 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 IL1AP01583 271 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 PRSS1P07477 247 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 CTPS1P17812 591 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 IL15P40933 162 aaPredicted RBP3.89□□□□□ -1.79
VPS50-219ENST00000495039 SREBF2Q12772 1141 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 TUBB8Q3ZCM7 444 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 DGAT2L7PQ6IED9 249 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 SHFQ7M4L6 423 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 SH2D6Q7Z4S9 175 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 SFTPA2Q8IWL1 248 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 CACNA2D3Q8IZS8 1091 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 LYG1Q8N1E2 194 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 MYCT1Q8N699 235 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 MORC4Q8TE76 937 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 RNF183Q96D59 192 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 F2RL3Q96RI0 385 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 ELAC1Q9H777 363 aaKnown RBP3.89□□□□□ -1.79
VPS50-219ENST00000495039 SLC9A2Q9UBY0 812 aa3.89□□□□□ -1.79
VPS50-219ENST00000495039 ARID4BQ4LE39 1312 aaPredicted RBP3.89□□□□□ -1.79
VPS50-219ENST00000495039 LILRA5A6NI73 299 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 ZNF587BE7ETH6 402 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 NBNO60934 754 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 CHN1P15882 459 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 SERPINA4P29622 427 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 BRWD1-AS2P59051 145 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 AP2B1P63010 937 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 FOXO1Q12778 655 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 PPIGQ13427 754 aaKnown RBP eCLIP3.88□□□□□ -1.79
VPS50-219ENST00000495039 TTC22Q5TAA0 569 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 ANO1Q5XXA6 986 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 NFE4Q86UQ8 179 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 SATL1Q86VE3 508 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 MON1AQ86VX9 555 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 ZC3HC1Q86WB0 502 aaKnown RBP3.88□□□□□ -1.79
VPS50-219ENST00000495039 METTL27Q8N6F8 245 aaPredicted RBP3.88□□□□□ -1.79
VPS50-219ENST00000495039 MAPK1IP1LQ8NDC0 245 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 ZMIZ2Q8NF64 920 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 ARRDC2Q8TBH0 407 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 PYGO2Q9BRQ0 406 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 HERPUD2Q9BSE4 406 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms