RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 COL18A1P39060 1754 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 MYH11P35749 1972 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 H3BSA7 217 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 MDM4O15151 490 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 FGF10O15520 208 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 EDIL3O43854 480 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 TIPRLO75663 272 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 CYP2C18P33260 490 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 GRIA4P48058 902 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 SOWAHAQ2M3V2 549 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 AARS2Q5JTZ9 985 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 MTIF3Q9H2K0 278 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 TMEM39AQ9NV64 488 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 UBA2Q9UBT2 640 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 RNASEH1O60930 286 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 ZBTB11O95625 1053 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 LSM3P62310 102 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 TTLL9Q3SXZ7 439 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 RETSATQ6NUM9 610 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 SLC41A1Q8IVJ1 513 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 YAF2Q8IY57 180 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 NSMCE2Q96MF7 247 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 FOPNLQ96NB1 174 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 SEMA3CQ99985 751 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 MRPL9Q9BYD2 267 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 ACE2Q9BYF1 805 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 TXLNGYQ9BZA5 131 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 NDUFAF1Q9Y375 327 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 TRIM43BA6NCK2 446 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 TAF4O00268 1085 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 PAGE1O75459 146 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 GSNP06396 782 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 ITGALP20701 1170 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 OGDHQ02218 1023 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 DGCR6Q14129 220 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 FAM156AQ8NDB6 213 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 OSCP1Q8WVF1 389 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 HPS1Q92902 700 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 CDH19Q9H159 772 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 ARHGEF4Q9NR80 690 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 MORF4L1Q9UBU8 362 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 COQ6Q9Y2Z9 468 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 MYH1P12882 1939 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 SERPIND1P05546 499 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 ENPEPQ07075 957 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 UGT3A1Q6NUS8 523 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 GLT6D1Q7Z4J2 308 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 ADCK2Q7Z695 626 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 RORBQ92753 470 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 CAB39LQ9H9S4 337 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 SNX10Q9Y5X0 201 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 SF3B1O75533 1304 aaKnown RBP eCLIP16.41■□□□□ 0.225e-8■■■■■ 63.3
CCDC88B-209ENST00000494080 HCRTO43612 131 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 C1orf220Q5T0J3 134 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 SFRP1Q8N474 314 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 SPAG4Q9NPE6 437 aa16.41■□□□□ 0.22
CCDC88B-209ENST00000494080 AKAP11Q9UKA4 1901 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 MYH15Q9Y2K3 1946 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 GUCA1CO95843 209 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 CRABP2P29373 138 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 LIN28AQ9H9Z2 209 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 STK39Q9UEW8 545 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 RAP2CQ9Y3L5 183 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 H3BNX3 289 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 TMEM63AO94886 807 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 PSMD5Q16401 504 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 C11orf91Q3C1V1 193 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 TPGS1Q6ZTW0 290 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 SIX5Q8N196 739 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 UTP4Q969X6 686 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 TCF12Q99081 682 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 ZYG11BQ9C0D3 744 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 C6orf62Q9GZU0 229 aaPredicted RBP16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 TEKT2Q9UIF3 430 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 SLC13A4Q9UKG4 626 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 SQORQ9Y6N5 450 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 KAT6AQ92794 2004 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 TLR5O60602 858 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 MAGEA8P43361 318 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 RUNX1T1Q06455 604 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 DEFB115Q30KQ5 88 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 ARHGAP15Q53QZ3 475 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 LDLRAP1Q5SW96 308 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 SCARA3Q6AZY7 606 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 HERC6Q8IVU3 1022 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 DDX1Q92499 740 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 CXorf21Q9HAI6 301 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 ITGB4P16144 1822 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 SYNDIG1LA6NDD5 238 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 PRR23AA6NEV1 266 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 YJEFN3A6XGL0 299 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 DUSP4Q13115 394 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 PPM1JQ5JR12 505 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 PDSS2Q86YH6 399 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 NPLOC4Q8TAT6 608 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 TRPC4APQ8TEL6 797 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 KCTD4Q8WVF5 259 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 TM6SF2Q9BZW4 377 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 GPR88Q9GZN0 384 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 PRDM16Q9HAZ2 1276 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms