RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 FGF1P05230 155 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 AOC1P19801 751 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 CORO1AP31146 461 aaKnown RBP21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 GRIA4P48058 902 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 SGSHP51688 502 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 CLCN5P51795 746 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 TSNAXIP1Q2TAA8 658 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 WLSQ5T9L3 541 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 IL31Q6EBC2 164 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 PTAR1Q7Z6K3 402 aaPredicted RBP21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 SPATA6LQ8N4H0 392 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 HDAC10Q969S8 669 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 OLFM1Q99784 485 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 MGME1Q9BQP7 344 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 DRC3Q9H069 523 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 GKN1Q9NS71 199 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 B2RBV5 119 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 PEX11AO75192 247 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 EPOP01588 193 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 SLC12A2P55011 1212 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 DSG1Q02413 1049 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 PLD1Q13393 1074 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 BTG3Q14201 252 aaPredicted RBP21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 TPGS2Q68CL5 300 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 TDRD5Q8NAT2 981 aaKnown RBP21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 FBXO27Q8NI29 283 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 MOCOSQ96EN8 888 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 COG4Q9H9E3 785 aa21.25■□□□□ 0.99
CCDC88B-208ENST00000492980 SPECC1L-ADORA2AF8WAN1 911 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 DLX3O60479 287 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 DIAPH2O60879 1101 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 CLDN11O75508 207 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 CHRNGP07510 517 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 MYL4P12829 197 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 ACVR1Q04771 509 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 KDSRQ06136 332 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 GALNT3Q14435 633 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 PREPLQ4J6C6 727 aaPredicted RBP21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 SPOUT1Q5T280 376 aaKnown RBP21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 EPGNQ6UW88 154 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 PNPLA1Q8N8W4 532 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 OR6P1Q8NGX9 317 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 HEXDCQ8WVB3 486 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 MCUR1Q96AQ8 359 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 SPON2Q9BUD6 331 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 RNF38Q9H0F5 515 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 MRPL46Q9H2W6 279 aaKnown RBP21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 ACSS2Q9NR19 701 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 IGSF5Q9NSI5 407 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 SEPT3Q9UH03 358 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 TBX21Q9UL17 535 aa21.24■□□□□ 0.99
CCDC88B-208ENST00000492980 KDELR3O43731 214 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 SERPINF2P08697 491 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 GLDCP23378 1020 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 ALDH1A3P47895 512 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 OXCT1P55809 520 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 PRAMEP78395 509 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 TMPRSS6Q8IU80 811 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 SLC39A11Q8N1S5 342 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 BBS5Q8N3I7 341 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 RBM15BQ8NDT2 890 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 WBP2Q969T9 261 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 TRMT2BQ96GJ1 504 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 UNKQ9C0B0 810 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 MMADHCQ9H3L0 296 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 MARCH4Q9P2E8 410 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 UBA2Q9UBT2 640 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 ANAPC1Q9H1A4 1944 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 LTBP2Q14767 1821 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 OR51F1A6NGY5 319 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 MPSTP25325 297 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 CCR10P46092 362 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 BLOC1S5Q8TDH9 187 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 PSKH2Q96QS6 385 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 TRIB3Q96RU7 358 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 HERC2P3Q9BVR0 1158 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 KLF16Q9BXK1 252 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 ILKAPQ9H0C8 392 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 AGO1Q9UL18 857 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 RAP2CQ9Y3L5 183 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 ARL5AQ9Y689 179 aa21.23■□□□□ 0.99
CCDC88B-208ENST00000492980 C2orf78A6NCI8 922 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 S1PR4O95977 384 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 IRF1P10914 325 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 RGRP47804 291 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 KPNA2P52292 529 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 NAGLUP54802 743 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 SLC14A2Q15849 920 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 CFAP157Q5JU67 520 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 CHST9Q7L1S5 443 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 TMCO2Q7Z6W1 182 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 LDB1Q86U70 411 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 LMNTD2Q8IXW0 634 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 TTC8Q8TAM2 541 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 MAPK15Q8TD08 544 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 PEX13Q92968 403 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 ZNF558Q96NG5 402 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 MRPL57Q9BQC6 102 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 CINPQ9BW66 212 aaPredicted RBP21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms