RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ANKRD1Q15327 319 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 CTXN3Q4LDR2 81 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 TMEM31Q5JXX7 168 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 FNBP1LQ5T0N5 605 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 FAM83BQ5T0W9 1011 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 JMJD6Q6NYC1 403 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-208ENST00000490788 RASGRP2Q7LDG7 609 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 WDR5BQ86VZ2 330 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 GPSM1Q86YR5 675 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 C2CD5Q86YS7 1000 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 TMC8Q8IU68 726 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 NGEFQ8N5V2 710 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 SCAIQ8N9R8 606 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 DNAAF1Q8NEP3 725 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 CEP70Q8NHQ1 597 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 BICD2Q8TD16 824 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 C2CD4CQ8TF44 421 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 SLC35F5Q8WV83 523 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 OIT3Q8WWZ8 545 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 INPP5DQ92835 1189 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 SH3KBP1Q96B97 665 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 KTI12Q96EK9 354 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-208ENST00000490788 PPP1R10Q96QC0 940 aaKnown RBP2.32□□□□□ -2.04
HMGB1-208ENST00000490788 ARPC5LQ9BPX5 153 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 NPLQ9BXD5 320 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-208ENST00000490788 POLDIP3Q9BY77 421 aaKnown RBP2.32□□□□□ -2.04
HMGB1-208ENST00000490788 SEZ6LQ9BYH1 1024 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 KRTAP1-5Q9BYS1 174 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 DCLK3Q9C098 648 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 PDCL3Q9H2J4 239 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 ABHD16BQ9H3Z7 469 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 RMI1Q9H9A7 625 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 ZDHHC7Q9NXF8 308 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 RNF186Q9NXI6 227 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 UPB1Q9UBR1 384 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 WNT16Q9UBV4 365 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 RCE1Q9Y256 329 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 RIPOR2Q9Y4F9 1068 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 CENPJQ9HC77 1338 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-208ENST00000490788 OBSCNQ5VST9 7968 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 TRPM1Q7Z4N2 1603 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 GCC2Q8IWJ2 1684 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 N4BP2Q86UW6 1770 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 A0A096LPK6 155 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 TRBV5-7A0A0A0MS05 114 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 OR6C68A6NDL8 312 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 FAM90A20PA6NIJ5 464 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 STX16-NPEPL1H3BU86 382 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 STX16O14662 325 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 SPRY3O43610 288 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 DDAH2O95865 285 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 TK1P04183 234 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 NGFRP08138 427 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 MMP10P09238 476 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 HOXC6P09630 235 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 WEE2P0C1S8 567 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 DHRS4L1P0CG22 281 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 UNGP13051 313 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 HOXB2P14652 356 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 DPP6P42658 865 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 GPR12P47775 334 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 ARL4CP56559 192 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 SETQ01105 290 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 EGR4Q05215 589 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 IL13RA2Q14627 380 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 TAF5Q15542 800 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 HLFQ16534 295 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 AP5B1Q2VPB7 878 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 SLC4A8Q2Y0W8 1093 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 ZNF484Q5JVG2 852 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 MON1BQ7L1V2 547 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 ZSCAN2Q7Z7L9 614 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 SERPINA11Q86U17 422 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 MOGAT3Q86VF5 341 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 ZDHHC23Q8IYP9 409 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 IQCF1Q8N6M8 205 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 LINS1Q8NG48 757 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 CEP76Q8TAP6 659 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 ADAMTS15Q8TE58 950 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 TBC1D22AQ8WUA7 517 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 HDAC7Q8WUI4 952 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 ANP32BQ92688 251 aaKnown RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 ZSCAN31Q96LW9 406 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 SCLT1Q96NL6 688 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 WDR77Q9BQA1 342 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 FRMD8Q9BZ67 464 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 ARHGAP39Q9C0H5 1083 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 TTC12Q9H892 705 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 IL21RQ9HBE5 538 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 PLAC1Q9HBJ0 212 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 RRAGDQ9NQL2 400 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 ENTPD7Q9NQZ7 604 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 ALKBH4Q9NXW9 302 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 IFT80Q9P2H3 777 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 SEL1LQ9UBV2 794 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 PLEKHB1Q9UF11 243 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 NOL12Q9UGY1 213 aaKnown RBP eCLIP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 FBXO40Q9UH90 709 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 HACL1Q9UJ83 578 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 PCDHA7Q9UN72 937 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms