RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 LHX3Q9UBR4 397 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 SSUH2Q9Y2M2 353 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 COQ6Q9Y2Z9 468 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 MFHAS1Q9Y4C4 1052 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 KIF26BQ2KJY2 2108 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 TCRBV5S1A1TA0A578 114 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 WASH4PA8MWX3 477 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 CDRT15L2A8MXV6 281 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 INSIG1O15503 277 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 RBMS1P29558 406 aaKnown RBP12.53□□□□□ -0.4
CPSF3-204ENST00000489403 STAT1P42224 750 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 PPARDQ03181 441 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 SERINC3Q13530 473 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 CLEC16AQ2KHT3 1053 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 TMEM52BQ4KMG9 183 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 TAF1BQ53T94 588 aaPredicted RBP12.53□□□□□ -0.4
CPSF3-204ENST00000489403 EFHC2Q5JST6 749 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 MON1BQ7L1V2 547 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 PHF13Q86YI8 300 aaPredicted RBP12.53□□□□□ -0.4
CPSF3-204ENST00000489403 C3orf20Q8ND61 904 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 ENOX1Q8TC92 643 aaKnown RBP12.53□□□□□ -0.4
CPSF3-204ENST00000489403 CHMP5Q9NZZ3 219 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 FZD10Q9ULW2 581 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 PADI4Q9UM07 663 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 SIK3Q9Y2K2 1263 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 DAAM1Q9Y4D1 1078 aa12.53□□□□□ -0.4
CPSF3-204ENST00000489403 ANKRD36A6QL64 1941 aa12.52□□□□□ -0.4
CPSF3-204ENST00000489403 SIGLEC16A6NMB1 481 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 RASA4BC9J798 803 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 NTN3O00634 580 aaPredicted RBP12.52□□□□□ -0.41
CPSF3-204ENST00000489403 RASA4O43374 803 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 CREB3O43889 395 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 CALB1P05937 261 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 C6P13671 934 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 HK3P52790 923 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 YBEYP58557 167 aaPredicted RBP12.52□□□□□ -0.41
CPSF3-204ENST00000489403 VAC14Q08AM6 782 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 ELP6Q0PNE2 266 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 SPIDRQ14159 915 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 CYTH1Q15438 398 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 TCEA2Q15560 299 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 WSCD2Q2TBF2 565 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 PARP15Q460N3 678 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 FKBP15Q5T1M5 1219 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 ESRP1Q6NXG1 681 aaKnown RBP12.52□□□□□ -0.41
CPSF3-204ENST00000489403 SCYL2Q6P3W7 929 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 FOXR1Q6PIV2 292 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 NYAP1Q6ZVC0 841 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 ZNF605Q86T29 641 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 DNAAF5Q86Y56 855 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 ARL10Q8N8L6 244 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 KYQ8NBH2 561 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 WDR36Q8NI36 951 aaKnown RBP12.52□□□□□ -0.41
CPSF3-204ENST00000489403 PCDH19Q8TAB3 1148 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 WDR48Q8TAF3 677 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 SNRNP27Q8WVK2 155 aaKnown RBP12.52□□□□□ -0.41
CPSF3-204ENST00000489403 TTC9Q92623 222 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 WBP1Q96G27 269 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 NCAPGQ9BPX3 1015 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 CPEB1Q9BZB8 566 aaKnown RBP12.52□□□□□ -0.41
CPSF3-204ENST00000489403 SEMA4CQ9C0C4 833 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 SYNDIG1Q9H7V2 258 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 PDFQ9HBH1 243 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 SIRPGQ9P1W8 387 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 RABGEF1Q9UJ41 708 aa12.52□□□□□ -0.41
CPSF3-204ENST00000489403 CCDC187A0A096LP49 1063 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 TSPAN11A1L157 253 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 K7ENP7 123 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 TPM2P07951 284 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 XPAP23025 273 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-204ENST00000489403 PEX5P50542 639 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 BLKP51451 505 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 SUOXP51687 545 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 ZNF143P52747 638 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-204ENST00000489403 RPL7AP62424 266 aaKnown RBP12.51□□□□□ -0.41
CPSF3-204ENST00000489403 NFATC4Q14934 902 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 LRRC14Q15048 493 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 ELOCQ15369 112 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 SYCP1Q15431 976 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 ALG11Q2TAA5 492 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 DNAJC24Q6P3W2 148 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 INO80CQ6PI98 192 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-204ENST00000489403 ENPP7Q6UWV6 458 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 CLEC14AQ86T13 490 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 ZSWIM9Q86XI8 627 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 UMODL1-AS1Q8N2C9 162 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 FSTL5Q8N475 847 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-204ENST00000489403 TSACCQ96A04 125 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-204ENST00000489403 CCDC97Q96F63 343 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-204ENST00000489403 MCEEQ96PE7 176 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 EDEM3Q9BZQ6 932 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 SUV39H2Q9H5I1 410 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 LRRC19Q9H756 370 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 CATSPERBQ9H7T0 1116 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 PCDH12Q9NPG4 1184 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 SEPT11Q9NVA2 429 aaKnown RBP12.51□□□□□ -0.41
CPSF3-204ENST00000489403 GULP1Q9UBP9 304 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 UBA2Q9UBT2 640 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-204ENST00000489403 DOLKQ9UPQ8 538 aa12.51□□□□□ -0.41
CPSF3-204ENST00000489403 TMEM110-MUSTN1A8MSY1 372 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms