RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 PAF1Q8N7H5 531 aa20.63■□□□□ 0.89
HDAC4-209ENST00000487617 DENND6BQ8NEG7 585 aa20.63■□□□□ 0.89
HDAC4-209ENST00000487617 SLC35G2Q8TBE7 412 aa20.63■□□□□ 0.89
HDAC4-209ENST00000487617 PSKH2Q96QS6 385 aa20.63■□□□□ 0.89
HDAC4-209ENST00000487617 PCDH12Q9NPG4 1184 aa20.63■□□□□ 0.89
HDAC4-209ENST00000487617 ACACBO00763 2458 aa20.63■□□□□ 0.89
HDAC4-209ENST00000487617 TRPM6Q9BX84 2022 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 MAFKO60675 156 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 KRT7P08729 469 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 MAN1A1P33908 653 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 AP1S1P61966 158 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 PDK2Q15119 407 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 TMEM52BQ4KMG9 183 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 ZFYVE27Q5T4F4 411 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 ERAP2Q6P179 960 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 KANSL1Q7Z3B3 1105 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 MAP7D3Q8IWC1 876 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 NSMCE1Q8WV22 266 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 CNDP2Q96KP4 475 aaKnown RBP20.62■□□□□ 0.89
HDAC4-209ENST00000487617 C1QTNF7Q9BXJ2 289 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 MSRB2Q9Y3D2 182 aa20.62■□□□□ 0.89
HDAC4-209ENST00000487617 ENC1O14682 589 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 PEX11BO96011 259 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 HSPA9P38646 679 aaKnown RBP20.61■□□□□ 0.89
HDAC4-209ENST00000487617 UNQ6494/PRO21346Q6UXR6 183 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 ZSWIM9Q86XI8 627 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 BBS5Q8N3I7 341 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 CENPTQ96BT3 561 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 IFT43Q96FT9 208 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 ZNF670Q9BS34 389 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 GPR27Q9NS67 375 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 DNAJC28Q9NX36 388 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 ATP8A1Q9Y2Q0 1164 aa20.61■□□□□ 0.89
HDAC4-209ENST00000487617 TP53BP1Q12888 1972 aaPredicted RBP20.61■□□□□ 0.89
HDAC4-209ENST00000487617 TTC24A2A3L6 582 aaPredicted RBP20.6■□□□□ 0.89
HDAC4-209ENST00000487617 C1QTNF9BB2RNN3 333 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 RIOK3O14730 519 aaKnown RBP20.6■□□□□ 0.89
HDAC4-209ENST00000487617 MFSD11O43934 449 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 DKK1O94907 266 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 PRKCGP05129 697 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 C1QTNF9P0C862 333 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 PDE1CQ14123 709 aaPredicted RBP20.6■□□□□ 0.89
HDAC4-209ENST00000487617 FZD2Q14332 565 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 ANKRD20A8PQ5CZ79 823 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 ZNF542PQ5EBM4 170 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 NCBP2-AS2Q69YL0 99 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 KDM7AQ6ZMT4 941 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 LRRC49Q8IUZ0 686 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 RHOT2Q8IXI1 618 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 PCDH19Q8TAB3 1148 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 COQ6Q9Y2Z9 468 aa20.6■□□□□ 0.89
HDAC4-209ENST00000487617 SPTY2D1-AS1A0A0U1RR47 76 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 DGKAP23743 735 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 IGFALSP35858 605 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 ARHGAP25P42331 645 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 PFN3P60673 137 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 SEMG2Q02383 582 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 DNAJC3Q13217 504 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 PAFAH1B3Q15102 231 aaKnown RBP20.59■□□□□ 0.89
HDAC4-209ENST00000487617 MARC1Q5VT66 337 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 SLC25A45Q8N413 288 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 PGBD5Q8N414 524 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 RFFLQ8WZ73 363 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 GATA6Q92908 595 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 ECHDC3Q96DC8 303 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 NSMCE3Q96MG7 304 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 MGME1Q9BQP7 344 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 CAAP1Q9H8G2 361 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 SCUBE2Q9NQ36 999 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 MBNL1Q9NR56 388 aaKnown RBP20.59■□□□□ 0.89
HDAC4-209ENST00000487617 UCKL1Q9NWZ5 548 aa20.59■□□□□ 0.89
HDAC4-209ENST00000487617 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.58■□□□□ 0.89
HDAC4-209ENST00000487617 FAM221BA6H8Z2 402 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 TRAFD1O14545 582 aaPredicted RBP20.58■□□□□ 0.89
HDAC4-209ENST00000487617 PIAS2O75928 621 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 MTA2O94776 668 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 C6P13671 934 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 MMP12P39900 470 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 MMP13P45452 471 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 LIG3P49916 1009 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 POLR2LP62875 67 aaKnown RBP20.58■□□□□ 0.89
HDAC4-209ENST00000487617 ST3GAL2Q16842 350 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 HS1BP3Q53T59 392 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 TPRG1LQ5T0D9 272 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 PARGQ86W56 976 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 TC2NQ8N9U0 490 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 TP53I13Q8NBR0 393 aaPredicted RBP20.58■□□□□ 0.89
HDAC4-209ENST00000487617 RAPGEF5Q92565 580 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 NUDCD1Q96RS6 583 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 TMEM121BQ9BXQ6 578 aaPredicted RBP20.58■□□□□ 0.89
HDAC4-209ENST00000487617 RBSNQ9H1K0 784 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 INTUQ9ULD6 942 aa20.58■□□□□ 0.89
HDAC4-209ENST00000487617 CHD8Q9HCK8 2581 aa20.58■□□□□ 0.88
HDAC4-209ENST00000487617 H3BM21 787 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 TRIM38O00635 465 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 FFAR2O15552 330 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 LZTS3O60299 673 aaPredicted RBP20.57■□□□□ 0.88
HDAC4-209ENST00000487617 MAP3K6O95382 1288 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 PROS1P07225 676 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 CR2P20023 1033 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms