RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 PARGQ86W56 976 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 DCP2Q8IU60 420 aaKnown RBP13.01□□□□□ -0.33
CHMP3-208ENST00000486404 CAMK1DQ8IU85 385 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 MAP7D3Q8IWC1 876 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 SLC22A18ASQ8N1D0 253 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 HCAR2Q8TDS4 363 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 ADAMTS14Q8WXS8 1223 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 ZNF830Q96NB3 372 aaPredicted RBP13.01□□□□□ -0.33
CHMP3-208ENST00000486404 ZNF670Q9BS34 389 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 C1QTNF2Q9BXJ5 285 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 PCDH12Q9NPG4 1184 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 ETNK2Q9NVF9 386 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 HAUS2Q9NVX0 235 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 ATP8A1Q9Y2Q0 1164 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 HS3ST3A1Q9Y663 406 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 LRP4O75096 1905 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 RAD51BO15315 384 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 FFAR2O15552 330 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 MFSD11O43934 449 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 ALPPL2P10696 532 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 TIMP2P16035 220 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 NFKBIAP25963 317 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 MMP12P39900 470 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 MMP13P45452 471 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 MMRN1Q13201 1228 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 DPYSL3Q14195 570 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 PDK2Q15119 407 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 UGP2Q16851 508 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 ASTE1Q2TB18 679 aaPredicted RBP13□□□□□ -0.33
CHMP3-208ENST00000486404 TP53INP2Q8IXH6 220 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 RHOT2Q8IXI1 618 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 ASB12Q8WXK4 309 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 RFFLQ8WZ73 363 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 TSC1Q92574 1164 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 LENG8Q96PV6 779 aaPredicted RBP13□□□□□ -0.33
CHMP3-208ENST00000486404 PSKH2Q96QS6 385 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 CHP1Q99653 195 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 SCUBE2Q9NQ36 999 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 WASF3Q9UPY6 502 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 MSRB2Q9Y3D2 182 aa13□□□□□ -0.33
CHMP3-208ENST00000486404 EPG5Q9HCE0 2579 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.99□□□□□ -0.33
CHMP3-208ENST00000486404 LRRD1A4D1F6 860 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 POM121BA6NF01 834 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 C1QTNF9BB2RNN3 333 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 LZTS3O60299 673 aaPredicted RBP12.99□□□□□ -0.33
CHMP3-208ENST00000486404 BUB1BO60566 1050 aaPredicted RBP12.99□□□□□ -0.33
CHMP3-208ENST00000486404 RFPL3O75679 317 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 CPP00450 1065 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 CD48P09326 243 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 ELFN1P0C7U0 828 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 C1QTNF9P0C862 333 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 C6P13671 934 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 IGFALSP35858 605 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 TAS2R40P59535 323 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 HNRNPKP61978 463 aaKnown RBP eCLIP12.99□□□□□ -0.33
CHMP3-208ENST00000486404 POLR2LP62875 67 aaKnown RBP12.99□□□□□ -0.33
CHMP3-208ENST00000486404 DAB2P98082 770 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 NSUN2Q08J23 767 aaKnown RBP eCLIP12.99□□□□□ -0.33
CHMP3-208ENST00000486404 SLC10A7Q0GE19 358 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 BNIP3Q12983 259 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 PTK2BQ14289 1009 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 IRF4Q15306 451 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 TMEM52BQ4KMG9 183 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 MARC1Q5VT66 337 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 SLCO6A1Q86UG4 719 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 CPNE8Q86YQ8 564 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.99□□□□□ -0.33
CHMP3-208ENST00000486404 PDCD6IPQ8WUM4 868 aaKnown RBP12.99□□□□□ -0.33
CHMP3-208ENST00000486404 SPOCK2Q92563 424 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 IFT43Q96FT9 208 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 LUC7LQ9NQ29 371 aaKnown RBP12.99□□□□□ -0.33
CHMP3-208ENST00000486404 TOR4AQ9NXH8 423 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 TTLL3Q9Y4R7 772 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 IGF2RP11717 2491 aa12.99□□□□□ -0.33
CHMP3-208ENST00000486404 SPTY2D1-AS1A0A0U1RR47 76 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 TMEM8BA6NDV4 472 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 NEMP2A6NFY4 417 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 MUSKO15146 869 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 SOCS5O75159 536 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 PIAS2O75928 621 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 KRT1P04264 644 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 PRKCGP05129 697 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 NME1P15531 152 aaKnown RBP12.98□□□□□ -0.33
CHMP3-208ENST00000486404 ITIH2P19823 946 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 HNF1BP35680 557 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 ARHGAP25P42331 645 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 LIG3P49916 1009 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 ITKQ08881 620 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 DNAJC3Q13217 504 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 LRRC14Q15048 493 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 ANKRD20A8PQ5CZ79 823 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 ZNF542PQ5EBM4 170 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 NCBP2-AS2Q69YL0 99 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 TIGD7Q6NT04 549 aaPredicted RBP12.98□□□□□ -0.33
CHMP3-208ENST00000486404 ZSWIM9Q86XI8 627 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 LRRC49Q8IUZ0 686 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 GALNT15Q8N3T1 639 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 SLC35G2Q8TBE7 412 aa12.98□□□□□ -0.33
CHMP3-208ENST00000486404 FAM71BQ8TC56 605 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms