RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 BCO2Q9BYV7 579 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 C6orf203Q9P0P8 240 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 VTI1BQ9UEU0 232 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 NHSL1Q5SYE7 1610 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CBFA2T3O75081 653 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 TGDSO95455 350 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 PSMA4P25789 261 aaKnown RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 NFYCQ13952 458 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 GALNT3Q14435 633 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ZNF618Q5T7W0 954 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ZNF567Q8N184 647 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CRYBG2Q8N1P7 616 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 VPS37AQ8NEZ2 397 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CMASQ8NFW8 434 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 IRGQQ8WZA9 623 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 FAM162AQ96A26 154 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 DACH2Q96NX9 599 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 C16orf70Q9BSU1 422 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 SLC4A5Q9BY07 1137 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 KLHL25Q9H0H3 589 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 DTLQ9NZJ0 730 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 Q9Y3F1 56 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 EDIL3O43854 480 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TBC1D4O60343 1298 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TCEA3O75764 348 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 CLTBP09497 229 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 LTA4HP09960 611 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 L1CAMP32004 1257 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 HALP42357 657 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 CCNG1P51959 295 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 THOP1P52888 689 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 FOLH1Q04609 750 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 PFKFB4Q16877 469 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 CLEC20AQ6ZU45 233 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 SNX32Q86XE0 403 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 OXCT2Q9BYC2 517 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 RHOBTB2Q9BYZ6 727 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 CERS4Q9HA82 394 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 CHRAC1Q9NRG0 131 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 COL16A1Q07092 1604 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 C15orf38-AP3S2A0A0A6YYH1 394 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 E9PAM4 449 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ZW10O43264 779 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 EOMESO95936 686 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 HOXB8P17481 243 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TFEBP19484 476 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 MSH3P20585 1137 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TKTP29401 623 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 GRK3P35626 688 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 RPL14P50914 215 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 PURAQ00577 322 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 PRKCQQ04759 706 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ACOX1Q15067 660 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ARPINQ7Z6K5 226 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TMEM110Q86TL2 294 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TDRPQ86YL5 185 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 SPATA22Q8NHS9 363 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 SLC35B2Q8TB61 432 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 METTL6Q8TCB7 284 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ERLEC1Q96DZ1 483 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TEX12Q9BXU0 123 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ELOVL6Q9H5J4 265 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 BRD9Q9H8M2 597 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 PLK2Q9NYY3 685 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 SPACA6W5XKT8 324 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TAF1P21675 1872 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 A0A087X1B8 175 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 KPNA4O00629 521 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 MLNP12872 115 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TTKP33981 857 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ATP1A4Q13733 1029 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 PTPRNQ16849 979 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 EML3Q32P44 896 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ZNF697Q5TEC3 545 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 RFWD3Q6PCD5 774 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ARCQ7LC44 396 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TSPAN14Q8NG11 270 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 PPP1R10Q96QC0 940 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 BBS2Q9BXC9 721 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 COPS7BQ9H9Q2 264 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 S100A14Q9HCY8 104 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 SSU72Q9NP77 194 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 TMPRSS4Q9NRS4 437 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 CCDC167Q9P0B6 97 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 AGO1Q9UL18 857 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ITM2BQ9Y287 266 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ARHGEF9O43307 516 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 RPL17P18621 184 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 FOXN2P32314 431 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 EIF2B2P49770 351 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 CLCN5P51795 746 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 RAP1GDS1P52306 607 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 IL2P60568 153 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 MRPS22P82650 360 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 KCTD21Q4G0X4 260 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 KIAA1324Q6UXG2 1013 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ALYREFQ86V81 257 aaKnown RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 HJURPQ8NCD3 748 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ARNTL2Q8WYA1 636 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 SCLYQ96I15 445 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms