RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 NCDNQ9UBB6 729 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 MYO1AQ9UBC5 1043 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 DKK3Q9UBP4 350 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 PCSK1NQ9UHG2 260 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 DNAI1Q9UI46 699 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 SLC25A13Q9UJS0 675 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 ANAPC7Q9UJX3 599 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 SLC6A14Q9UN76 642 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 ZFR2Q9UPR6 939 aaKnown RBP5.81□□□□□ -1.48
CUX1-208ENST00000485792 WASF3Q9UPY6 502 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 GPC6Q9Y625 555 aaPredicted RBP5.81□□□□□ -1.48
CUX1-208ENST00000485792 DUSP10Q9Y6W6 482 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 ADAMTS20P59510 1910 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 LOC400499M0QZD8 3231 aa5.81□□□□□ -1.48
CUX1-208ENST00000485792 ANKRD11Q6UB99 2663 aaPredicted RBP5.81□□□□□ -1.48
CUX1-208ENST00000485792 SPENQ96T58 3664 aaKnown RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 A0A1B0GTW7 788 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 A0A1W2PP55 124 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 A0A1W2PPC4 97 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 CBX4O00257 560 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 EEF2KO00418 725 aaKnown RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 TRAFD1O14545 582 aaPredicted RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 GIPC1O14908 333 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 FANCGO15287 622 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 RAD51BO15315 384 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 PRPSAP2O60256 369 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 MAFKO60675 156 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 RNASEH1O60930 286 aaKnown RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 SEMA4FO95754 770 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 TOP3BO95985 862 aaKnown RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 DNTTP04053 509 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 PRNPP04156 253 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 PRKCGP05129 697 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 SDHBP21912 280 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 ITGB7P26010 798 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 CD27P26842 260 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 NUDT1P36639 197 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 NOP2P46087 812 aaKnown RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 GRIA4P48058 902 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 PSMD8P48556 350 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 CCNHP51946 323 aaPredicted RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 GEMIN4P57678 1058 aaKnown RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 CREB5Q02930 508 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 IL10RBQ08334 325 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 CNTN1Q12860 1018 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 SFSWAPQ12872 951 aaKnown RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 SLC14A1Q13336 389 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 DPYSL3Q14195 570 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 PUM1Q14671 1186 aaKnown RBP eCLIP5.8□□□□□ -1.48
CUX1-208ENST00000485792 RFTN1Q14699 578 aaPredicted RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 TTC31Q49AM3 519 aaPredicted RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 CARD16Q5EG05 197 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 WDR45BQ5MNZ6 344 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 ATXN7L2Q5T6C5 722 aaPredicted RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 STPG1Q5TH74 334 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 DCAF12L1Q5VU92 463 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 FAM46CQ5VWP2 391 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 LYSMD4Q5XG99 296 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 NCBP2-AS2Q69YL0 99 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 AADACL2Q6P093 401 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 SCYL2Q6P3W7 929 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 KIAA1324Q6UXG2 1013 aaKnown RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 CAPN12Q6ZSI9 719 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 B4GALNT4Q76KP1 1039 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 ERMP1Q7Z2K6 904 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 KANSL1Q7Z3B3 1105 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 DSG4Q86SJ6 1040 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 FAM124AQ86V42 546 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 IQCHQ86VS3 1027 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 LRRC49Q8IUZ0 686 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 RHOT2Q8IXI1 618 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 PGBD3Q8N328 593 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 PLD5Q8N7P1 536 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 ATP11CQ8NB49 1132 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 TMEM145Q8NBT3 493 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 OR2AP1Q8NGE2 309 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 PCDH19Q8TAB3 1148 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 BAHD1Q8TBE0 780 aaPredicted RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 PIP4K2CQ8TBX8 421 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 CTNNBL1Q8WYA6 563 aaPredicted RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 RFFLQ8WZ73 363 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 OR8D1Q8WZ84 308 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 RAPGEF5Q92565 580 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 MAML1Q92585 1016 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 KRT35Q92764 455 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 EXOC2Q96KP1 924 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 CCDC42Q96M95 316 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 HSPA12BQ96MM6 686 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 ZNF599Q96NL3 588 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 CSPG4P5Q96PW8 444 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 PSKH2Q96QS6 385 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 ZNF670Q9BS34 389 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 RTKNQ9BST9 563 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.8□□□□□ -1.48
CUX1-208ENST00000485792 TM6SF2Q9BZW4 377 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 ZDHHC5Q9C0B5 715 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 BTBD1Q9H0C5 482 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 DHX35Q9H5Z1 703 aaKnown RBP5.8□□□□□ -1.48
CUX1-208ENST00000485792 RUBCNLQ9H714 662 aa5.8□□□□□ -1.48
CUX1-208ENST00000485792 CUEDC1Q9NWM3 386 aaPredicted RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms