RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 PPHLN1Q8NEY8 458 aaKnown RBP10.25□□□□□ -0.77
USP39-215ENST00000481409 OR52K1Q8NGK4 314 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 BRSK1Q8TDC3 778 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 CYB5D2Q8WUJ1 264 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 SCG3Q8WXD2 468 aaKnown RBP10.25□□□□□ -0.77
USP39-215ENST00000481409 OR8D1Q8WZ84 308 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 PTPRN2Q92932 1015 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 STAMBPL1Q96FJ0 436 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 PPP1R16AQ96I34 528 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 LYSMD1Q96S90 227 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 NELL2Q99435 816 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 KIFC1Q9BW19 673 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 TM6SF2Q9BZW4 377 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 CDC42EP4Q9H3Q1 356 aaKnown RBP10.25□□□□□ -0.77
USP39-215ENST00000481409 SUV39H2Q9H5I1 410 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 MAGEE1Q9HCI5 957 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 UBP1Q9NZI7 540 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 ZC3H7BQ9UGR2 993 aaKnown RBP10.25□□□□□ -0.77
USP39-215ENST00000481409 IL36AQ9UHA7 158 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 SLCO3A1Q9UIG8 710 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 PHTF1Q9UMS5 762 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 SOX13Q9UN79 622 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 ACTL7AQ9Y615 435 aa10.25□□□□□ -0.77
USP39-215ENST00000481409 A0A087WUV0 522 aaPredicted RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 TSPAN11A1L157 253 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 ANKRD66B4E2M5 251 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 C1QTNF3-AMACRE9PGA6 284 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 K7EQS6 105 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 TRIM24O15164 1050 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 RIPK2O43353 540 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 RNASEH1O60930 286 aaKnown RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 TCEA3O75764 348 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 AGTP01019 485 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 IVLP07476 585 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 ATXN1LP0C7T5 689 aaKnown RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 NTSR1P30989 418 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 HSD17B3P37058 310 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 ELK3P41970 407 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 KIR2DL1P43626 348 aaPredicted RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 EPHB1P54762 984 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 SFSWAPQ12872 951 aaKnown RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 NAB1Q13506 487 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 STAT4Q14765 748 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 CASP8Q14790 479 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 MLF2Q15773 248 aaPredicted RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 PCSK7Q16549 785 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 SIRPB2Q5JXA9 342 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 FAM46CQ5VWP2 391 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 STEAP4Q687X5 459 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 GDPD4Q6W3E5 623 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 ZNF852Q6ZMS4 543 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 DPY19L3Q6ZPD9 716 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 Q6ZVU0 165 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 LMNTD2Q8IXW0 634 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 GSPT2Q8IYD1 628 aaKnown RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 RYBPQ8N488 228 aaPredicted RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 ZNF513Q8N8E2 541 aaPredicted RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 FBXO36Q8NEA4 188 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 FAM3CQ92520 227 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 GABRG3Q99928 467 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 TMEM109Q9BVC6 243 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 ROPN1BQ9BZX4 212 aaPredicted RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 ROPN1Q9HAT0 212 aaPredicted RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 HEBP1Q9NRV9 189 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 EVLQ9UI08 416 aaPredicted RBP10.24□□□□□ -0.77
USP39-215ENST00000481409 SCML1Q9UN30 329 aa10.24□□□□□ -0.77
USP39-215ENST00000481409 ANKRD36A6QL64 1941 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 C2orf81A6NN90 581 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 TTC34A8MYJ7 566 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 MAP2K7O14733 419 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 SYNCRIPO60506 623 aaKnown RBP10.23□□□□□ -0.77
USP39-215ENST00000481409 ALDH1A2O94788 518 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 PRLP01236 227 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 ZNF30P17039 623 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 PSMA3P25788 255 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 MGAT1P26572 445 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 GRIA1P42261 906 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 PTPN5P54829 565 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 SESN2P58004 480 aaPredicted RBP10.23□□□□□ -0.77
USP39-215ENST00000481409 ZBTB16Q05516 673 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 TRAF2Q12933 501 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 GPS2Q13227 327 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 MSLNQ13421 630 aaPredicted RBP10.23□□□□□ -0.77
USP39-215ENST00000481409 CAMK2GQ13555 558 aaPredicted RBP10.23□□□□□ -0.77
USP39-215ENST00000481409 LRRC32Q14392 662 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 SPARCL1Q14515 664 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 STARD3Q14849 445 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 RASA2Q15283 850 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 TAF1AQ15573 450 aaPredicted RBP10.23□□□□□ -0.77
USP39-215ENST00000481409 SKIDA1Q1XH10 827 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 KLHL38Q2WGJ6 581 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 MSS51Q4VC12 460 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 ZNF805Q5CZA5 627 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 EOGTQ5NDL2 527 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 ATXN7L2Q5T6C5 722 aaPredicted RBP10.23□□□□□ -0.77
USP39-215ENST00000481409 C9orf64Q5T6V5 341 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 ZDHHC20Q5W0Z9 365 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 CASC4Q6P4E1 433 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 PKN3Q6P5Z2 889 aa10.23□□□□□ -0.77
USP39-215ENST00000481409 C3orf62Q6ZUJ4 267 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms