RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	CAND1	Q86VP6	1230 aa	Known RBP	4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	CRLF3	Q8IUI8	442 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	TBC1D10C	Q8IV04	446 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	PM20D2	Q8IYS1	436 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	BLID	Q8IZY5	108 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	FIBCD1	Q8N539	461 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	ANKRD53	Q8N9V6	530 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	LILRB1	Q8NHL6	650 aa	Predicted RBP	4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	GSDMB	Q8TAX9	411 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	HCAR2	Q8TDS4	363 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	RAB2B	Q8WUD1	216 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	ZNF296	Q8WUU4	475 aa	Predicted RBP	4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	STAM	Q92783	540 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	CCDC127	Q96BQ5	260 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	C12orf43	Q96C57	262 aa	Known RBP	4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	VMP1	Q96GC9	406 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	PEX11G	Q96HA9	241 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	ZNF597	Q96LX8	424 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	GCNA	Q96QF7	691 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	PSKH2	Q96QS6	385 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	CDRT15	Q96T59	188 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	CYTH2	Q99418	400 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	C17orf80	Q9BSJ5	609 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	CCDC106	Q9BWC9	280 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	ANKRD60	Q9BZ19	345 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	SLC7A5P2	Q9GIP4	190 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	HOXD1	Q9GZZ0	328 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	UGT1A7	Q9HAW7	530 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	UGT1A10	Q9HAW8	530 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	UGT1A8	Q9HAW9	530 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	KCNK13	Q9HB14	408 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	GP6	Q9HCN6	339 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	SLCO1B3	Q9NPD5	702 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	GDAP2	Q9NXN4	497 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	GPRC5D	Q9NZD1	345 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	UBP1	Q9NZI7	540 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	COPG2	Q9UBF2	871 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	DAPK2	Q9UIK4	370 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	VANGL2	Q9ULK5	521 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	STRIP2	Q9ULQ0	834 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	ARHGAP26	Q9UNA1	814 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	INPP5F	Q9Y2H2	1132 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	TESMIN	Q9Y4I5	508 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	CPQ	Q9Y646	472 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	HS3ST3A1	Q9Y663	406 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	ALG6	Q9Y672	507 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	PSME4	Q14997	1843 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	SCN9A	Q15858	1988 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	ROBO3	Q96MS0	1386 aa		4.78	□□□□□ -1.64
PTCD3-212	ENST00000477520	GOLGB1	Q14789	3259 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	FLT1	P17948	1338 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	ARHGEF37	A1IGU5	675 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	MAGEB16	A2A368	324 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	GLTPD2	A6NH11	291 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CALU	O43852	315 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	B4GALT3	O60512	393 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	KRT37	O76014	449 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	MYO1D	O94832	1006 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CD3E	P07766	207 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	RPS17	P08708	135 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	OR52Z1	P0C646	297 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	TRAPPC2	P0DI81	140 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	TRAPPC2B	P0DI82	140 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CYP2C8	P10632	490 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	MYL2	P10916	166 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	ACTN1	P12814	892 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CREB1	P16220	341 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	NAGA	P17050	411 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	ATF7	P17544	494 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CD9	P21926	228 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	IVD	P26440	423 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	PEX2	P28328	305 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CD40LG	P29965	261 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CIITA	P33076	1130 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	GUCY1A2	P33402	732 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	RPA3	P35244	121 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	SOX5	P35711	763 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CPOX	P36551	454 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	ADCY8	P40145	1251 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	STT3A	P46977	705 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	ITGA8	P53708	1063 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	ALDH18A1	P54886	795 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	P2RX3	P56373	397 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	ARL4C	P56559	192 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	KRT17	Q04695	432 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	SLC18A2	Q05940	514 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	SF3A3	Q12874	501 aa	Known RBP eCLIP	4.77	□□□□□ -1.65	2e-9	■■□□□ 14
PTCD3-212	ENST00000477520	NAB1	Q13506	487 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CCNI	Q14094	377 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	GALNT3	Q14435	633 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	SLC9A5	Q14940	896 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	OASL	Q15646	514 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	TSC22D1	Q15714	1073 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	DUSP7	Q16829	419 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CCDC142	Q17RM4	750 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	TIGD2	Q4W5G0	525 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	DCAF6	Q58WW2	860 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	HABP4	Q5JVS0	413 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	FAM26F	Q5R3K3	315 aa		4.77	□□□□□ -1.65

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