RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 PAF1Q8N7H5 531 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 PDCD6IPQ8WUM4 868 aaKnown RBP12.05□□□□□ -0.48
VPS13D-204ENST00000469054 MAIP1Q8WWC4 291 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 DNASE2BQ8WZ79 361 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 BIRC7Q96CA5 298 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 OSBPL9Q96SU4 736 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 SLC25A51Q9H1U9 297 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 USP29Q9HBJ7 922 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 GLOD4Q9HC38 313 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 TRHDEQ9UKU6 1024 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 DNPEPQ9ULA0 475 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 TPX2Q9ULW0 747 aaKnown RBP12.05□□□□□ -0.48
VPS13D-204ENST00000469054 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.05□□□□□ -0.48
VPS13D-204ENST00000469054 RAI2Q9Y5P3 530 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 NEMP1O14524 444 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 KCNN4O15554 427 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 TSPAN6O43657 245 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 FZD6O60353 706 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 PCDH8O95206 1070 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 IGHV4-34P06331 123 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 MMP2P08253 660 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 ITIH2P19823 946 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 CD86P42081 329 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 DPP6P42658 865 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 PPP2CBP62714 309 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 PPP2CAP67775 309 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 LONRF2Q1L5Z9 754 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 LRRC73Q5JTD7 316 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 ARMC12Q5T9G4 340 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 CYP2U1Q7Z449 544 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 PRPF39Q86UA1 669 aaKnown RBP12.04□□□□□ -0.48
VPS13D-204ENST00000469054 TRIM69Q86WT6 500 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 HORMAD1Q86X24 394 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 SYT12Q8IV01 421 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 RASGEF1CQ8N431 466 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 C1orf54Q8WWF1 131 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 ATG4AQ8WYN0 398 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 SNX19Q92543 992 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 RUBCNQ92622 972 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 PIGKQ92643 395 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 IMP4Q96G21 291 aaKnown RBP12.04□□□□□ -0.48
VPS13D-204ENST00000469054 FEM1CQ96JP0 617 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 WDR24Q96S15 920 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 TDRD1Q9BXT4 1180 aaKnown RBP12.04□□□□□ -0.48
VPS13D-204ENST00000469054 ARRDC1-AS1Q9H2J1 176 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 TMEM74BQ9NUR3 256 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 NCDNQ9UBB6 729 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 EIF2B4Q9UI10 523 aaKnown RBP12.04□□□□□ -0.48
VPS13D-204ENST00000469054 PILRBQ9UKJ0 227 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 TTC7AQ9ULT0 858 aaPredicted RBP12.04□□□□□ -0.48
VPS13D-204ENST00000469054 PHTF1Q9UMS5 762 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 SNX12Q9UMY4 172 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 ZKSCAN5Q9Y2L8 839 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 PCDHB9Q9Y5E1 797 aa12.04□□□□□ -0.48
VPS13D-204ENST00000469054 A0A1W2PPC4 97 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 A0A1W2PQU0 124 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 CFAP69A5D8W1 941 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 CES2O00748 559 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 RIOK3O14730 519 aaKnown RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 SPINT1O43278 529 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 LATO43561 262 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 LIASO43766 372 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 RNGTTO60942 597 aaKnown RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 STK10O94804 968 aaKnown RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 CPP00450 1065 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 PDHA1P08559 390 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 PRLRP16471 622 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 TCP1P17987 556 aaKnown RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 NFKB1P19838 968 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 CA4P22748 312 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 CD27P26842 260 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 MAT2AP31153 395 aaKnown RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 STIP1P31948 543 aaKnown RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 HOXD12P35452 270 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 MPLP40238 635 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 RPS21P63220 83 aaKnown RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ELP6Q0PNE2 266 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 OASLQ15646 514 aaKnown RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 SLC14A2Q15849 920 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 CCNG2Q16589 344 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 TMEM52BQ4KMG9 183 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ANKRD20A2Q5SQ80 823 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ANKRD20A1Q5TYW2 823 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ANKRD20A3Q5VUR7 823 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 PEAR1Q5VY43 1037 aaPredicted RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 PAPD7Q5XG87 772 aaKnown RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 SEL1L3Q68CR1 1132 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ITPRIPL1Q6GPH6 555 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 KIAA1161Q6NSJ0 714 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ERAP2Q6P179 960 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ZSCAN30Q86W11 494 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ABCA7Q8IZY2 2146 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 FAM71DQ8N9W8 422 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 SPATA22Q8NHS9 363 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 COG1Q8WTW3 980 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 PIH1D2Q8WWB5 315 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 TADA1Q96BN2 335 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 TRIM44Q96DX7 344 aaPredicted RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 FAM122AQ96E09 287 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 MS4A14Q96JA4 679 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms