RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 SMYD2Q9NRG4 433 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 GMEB1Q9Y692 573 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 CCDC78A2IDD5 438 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 TM9SF1O15321 606 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 PRPF4O43172 522 aaKnown RBP eCLIP7.73□□□□□ -1.17
USP54-210ENST00000466048 TIMM44O43615 452 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 SAT1P21673 171 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 OR1E1P30953 314 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 CASP2P42575 452 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 GDF10P55107 478 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 IFI35P80217 286 aaPredicted RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 LRRC36Q1X8D7 754 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 MFSD4BQ5TF39 518 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 NCBP2-AS2Q69YL0 99 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 TRIM74Q86UV6 250 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 TRIM73Q86UV7 250 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 EXOC3L1Q86VI1 746 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 TTC8Q8TAM2 541 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 HAPLN3Q96S86 360 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 ZCWPW1Q9H0M4 648 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 SCUBE2Q9NQ36 999 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 EURLQ9NYK6 297 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 HAO1Q9UJM8 370 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 SDR42E2A6NKP2 422 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 E5RI56 91 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 IRAK2O43187 625 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 HCRTO43612 131 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 DGKIO75912 1065 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 ASMTLO95671 621 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 CRTAMO95727 393 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 BCL10O95999 233 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 PYGLP06737 847 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 ALOX5P09917 674 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 IL4RP24394 825 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 TUBP50607 506 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 ALDH18A1P54886 795 aaKnown RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 YBEYP58557 167 aaPredicted RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 DMPKQ09013 629 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 SGCGQ13326 291 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 BLMHQ13867 455 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 TTLL9Q3SXZ7 439 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 THEMIS2Q5TEJ8 643 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 ZNF398Q8TD17 642 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 AGAP11Q8TF27 550 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 ACDQ96AP0 544 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 C1orf50Q9BV19 199 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 TEX12Q9BXU0 123 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 ZYG11BQ9C0D3 744 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 PAIP1Q9H074 479 aaKnown RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 UBA2Q9UBT2 640 aaPredicted RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 TAGLN3Q9UI15 199 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 TRIP11Q15643 1979 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 A0A087WXM4 84 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 MAGEB16A2A368 324 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 MATN2O00339 956 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 STX7O15400 261 aaKnown RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 NDUFS2O75306 463 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 KRT6AP02538 564 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 ALBP02768 609 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 KRT6BP04259 564 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 RGS4P49798 205 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 CAP1Q01518 475 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 DSC1Q08554 894 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 TAF10Q12962 218 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 PRKD1Q15139 912 aaPredicted RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 RGS21Q2M5E4 152 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 FOXR1Q6PIV2 292 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 SLC26A11Q86WA9 606 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 LRRC6Q86X45 466 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 IRF7Q92985 503 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 BTBD10Q9BSF8 475 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 ADNPQ9H2P0 1102 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 EML4Q9HC35 981 aaKnown RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 IGSF9Q9P2J2 1179 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 ZNF180Q9UJW8 692 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 YIPF1Q9Y548 306 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 PNMA8CA0A1B0GUJ8 204 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 GOLGA8TH3BQL2 631 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 AKAP10O43572 662 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 KLHL41O60662 606 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 GJB5O95377 273 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 DLGAP3O95886 979 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 SPATA31D3P0C874 917 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 THRAP10827 490 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 FOSL2P15408 326 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 SERPINA4P29622 427 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 ELK3P41970 407 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 BTKQ06187 659 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 STX5Q13190 355 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 DNAJC3Q13217 504 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 LACTB2Q53H82 288 aaPredicted RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 UGT3A1Q6NUS8 523 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 SPATA31D4Q6ZUB0 917 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 BNIPLQ7Z465 357 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 CELF5Q8N6W0 485 aaKnown RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 PAFAH2Q99487 392 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 BBS2Q9BXC9 721 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 CLIC5Q9NZA1 410 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 DTLQ9NZJ0 730 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms