RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PAX3P23760 479 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 GPR15P49685 360 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 ZCCHC8Q6NZY4 707 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 MZT2AQ6P582 158 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 ZNF621Q6ZSS3 439 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 CLPTM1LQ96KA5 538 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 AREL1O15033 823 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 LGR5O75473 907 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 MSX2P35548 267 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 RFX3P48380 749 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 TGM3Q08188 693 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 DPP10Q8N608 796 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 POC5Q8NA72 575 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 ST13P5Q8NFI4 369 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 OR2T34Q8NGX1 318 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 OR2T3Q8NH03 318 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 WDR36Q8NI36 951 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 OSBPL10Q9BXB5 764 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 CASTOR2A6NHX0 329 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 GPRIN3Q6ZVF9 776 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 EPHX4Q8IUS5 362 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 JOSD2Q8TAC2 188 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 SPOCK2Q92563 424 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 EBF2Q9HAK2 575 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 DDNO94850 711 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 CST1P01037 141 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 AKR1A1P14550 325 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 RPL26P61254 145 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 PLPPR4Q7Z2D5 763 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 ZNF540Q8NDQ6 660 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 TRAPPC12Q8WVT3 735 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 NOCTQ9UK39 431 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 H3BN98 237 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 SNPHO15079 494 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 ITGA2P17301 1181 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 CDK20Q8IZL9 346 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 C10orf82Q8WW14 230 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 DPF3Q92784 378 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 TRAF6Q9Y4K3 522 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 FADS3Q9Y5Q0 445 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 PMM2O15305 246 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 YWHAQP27348 245 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 PBLDP30039 288 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 SLC26A3P40879 764 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 TTPAP49638 278 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 ACSM2AQ08AH3 577 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 ACSM2BQ68CK6 577 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 PROX1Q92786 737 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 LGMNQ99538 433 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 SNX8Q9Y5X2 465 aa19.12■□□□□ 0.65
CCDC88B-204ENST00000463837 CACNA1FO60840 1977 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 FER1L4A9Z1Z3 1794 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 LRRC52Q8N7C0 313 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 PTCD2Q8WV60 388 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 TMEM59LQ9UK28 342 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 COX7A2P14406 83 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 IL12AP29459 219 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 GALK1P51570 392 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 PTPN20Q4JDL3 420 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 ZNF544Q6NX49 715 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 CUZD1Q86UP6 607 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 NPAS2Q99743 824 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 EPB41L1Q9H4G0 881 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 CARNS1A5YM72 827 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 SPATA31C2B4DYI2 1134 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 TNFRSF21O75509 655 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 RECQL4O94761 1208 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 C2P06681 752 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 TNFSF9P41273 254 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 ATN1P54259 1190 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 GRIK5Q16478 980 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 VSTM1Q6UX27 236 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 UTS2BQ765I0 119 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 XYLT1Q86Y38 959 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 TMEM159Q96B96 161 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 P2RY11Q96G91 374 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 ARMC7Q9H6L4 198 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 CLN6Q9NWW5 311 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 TRPC4Q9UBN4 977 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 C4BPAP04003 597 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 UMPSP11172 480 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 FEN1P39748 380 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 KLHL12Q53G59 568 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 CELF3Q5SZQ8 465 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 IKBIPQ70UQ0 350 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 CDH24Q86UP0 819 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 PIGZQ86VD9 579 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 PSMA8Q8TAA3 256 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 EZH1Q92800 747 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 TSEN34Q9BSV6 310 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 SIX2Q9NPC8 291 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 DERAQ9Y315 318 aa19.11■□□□□ 0.65
CCDC88B-204ENST00000463837 IDH3BO43837 385 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 ANXA5P08758 320 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 BNC1Q01954 994 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 ARHGAP36Q6ZRI8 547 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 ASZ1Q8WWH4 475 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 MCRS1Q96EZ8 462 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 COX4I2Q96KJ9 171 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms