RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815		D6RAR5	112 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	NEMP1	O14524	444 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	EPHB6	O15197	1021 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	RAMP2	O60895	175 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	TM7SF2	O76062	418 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	ANXA6	P08133	673 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	PLEK	P08567	350 aa	Predicted RBP	11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	UNG	P13051	313 aa	Predicted RBP	11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	RPIA	P49247	311 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	PEX5	P50542	639 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	HK3	P52790	923 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	THOP1	P52888	689 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	JAM2	P57087	298 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	CDR2	Q01850	454 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	POLD3	Q15054	466 aa	Predicted RBP	11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	CYTH1	Q15438	398 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	CDO1	Q16878	200 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	INO80D	Q53TQ3	878 aa	Predicted RBP	11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	HSP90AA4P	Q58FG1	418 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	RWDD4	Q6NW29	188 aa	Known RBP	11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	PHLDB2	Q86SQ0	1253 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	TTC7B	Q86TV6	843 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	ZNF677	Q86XU0	584 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	RYBP	Q8N488	228 aa	Predicted RBP	11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	ARL14	Q8N4G2	192 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	RTL3	Q8N8U3	475 aa	Known RBP	11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	GPR156	Q8NFN8	814 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	PCDH19	Q8TAB3	1148 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	FAM172A	Q8WUF8	416 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	CCDC74A	Q96AQ1	378 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	CCDC97	Q96F63	343 aa	Predicted RBP	11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	GDAP1L1	Q96MZ0	367 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	PCDHB18P	Q96TA0	734 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	WRAP53	Q9BUR4	548 aa	Known RBP	11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	EDEM3	Q9BZQ6	932 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	SLC13A1	Q9BZW2	595 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	PDCL3	Q9H2J4	239 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	PDF	Q9HBH1	243 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	COQ6	Q9Y2Z9	468 aa		11.28	□□□□□ -0.6
PTPN7-204	ENST00000462815	TLN1	Q9Y490	2541 aa	Known RBP	11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	WASH4P	A8MWX3	477 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	PLD2	O14939	933 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	PIGN	O95427	931 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	PRKCSH	P14314	528 aa	Predicted RBP	11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	GM2A	P17900	193 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	SDC4	P31431	198 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	SLC5A2	P31639	672 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	CCKBR	P32239	447 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	RFC1	P35251	1148 aa	Predicted RBP	11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	UGT1A5	P35504	534 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	KLK7	P49862	253 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	UBE2H	P62256	183 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	CCL7	P80098	99 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	PPARD	Q03181	441 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	SERINC3	Q13530	473 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	SPIDR	Q14159	915 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	NFATC4	Q14934	902 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	LVRN	Q6Q4G3	990 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	CCDC81	Q6ZN84	652 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	TMPRSS9	Q7Z410	1059 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	SFTPA2	Q8IWL1	248 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	FSTL5	Q8N475	847 aa	Predicted RBP	11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	SLC30A5	Q8TAD4	765 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	CXorf40A	Q8TE69	158 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	CASKIN2	Q8WXE0	1202 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	GLMN	Q92990	594 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	TSACC	Q96A04	125 aa	Predicted RBP	11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	HMCES	Q96FZ2	354 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	CCNL2	Q96S94	520 aa	Predicted RBP	11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	RBM15	Q96T37	977 aa	Known RBP eCLIP	11.27	□□□□□ -0.61	3e-6	■■■■□ 20.8
PTPN7-204	ENST00000462815	C11orf70	Q9BRQ4	267 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	CPEB1	Q9BZB8	566 aa	Known RBP	11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	SAMSN1	Q9NSI8	373 aa	Known RBP	11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	ANKRD36	A6QL64	1941 aa		11.27	□□□□□ -0.61
PTPN7-204	ENST00000462815	BUB1	O43683	1085 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	BUB1B	O60566	1050 aa	Predicted RBP	11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	GFPT2	O94808	682 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	IGSF6	O95976	241 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	HGF	P14210	728 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	WT1	P19544	449 aa	Predicted RBP	11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	ERCC5	P28715	1186 aa	Predicted RBP	11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	MMP12	P39900	470 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	RGR	P47804	291 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	SUOX	P51687	545 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	ZFP36L1	Q07352	338 aa	Known RBP	11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	RALGDS	Q12967	914 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	EIF3I	Q13347	325 aa	Known RBP	11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	LRRC14	Q15048	493 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	ELOC	Q15369	112 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	TGIF1	Q15583	401 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	UGP2	Q16851	508 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	TCP11X2	Q5H9J9	407 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	PPP1R15B	Q5SWA1	713 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	FAXC	Q5TGI0	409 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	ESRP1	Q6NXG1	681 aa	Known RBP	11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	FOXR1	Q6PIV2	292 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	OGFOD3	Q6PK18	319 aa		11.26	□□□□□ -0.61
PTPN7-204	ENST00000462815	FAM114A1	Q8IWE2	563 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms