RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 STYXQ8WUJ0 223 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 MUS81Q96NY9 551 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 UHRF1Q96T88 793 aaPredicted RBP11.8□□□□□ -0.52
CPSF3-202ENST00000460593 DOK1Q99704 481 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 PDZD7Q9H5P4 517 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 GIN1Q9NXP7 522 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 TMEM181Q9P2C4 612 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 GNPTGQ9UJJ9 305 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 TMEM98Q9Y2Y6 226 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 ACOX3O15254 700 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 PROZP22891 400 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 SHMT2P34897 504 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 HPCAL1P37235 193 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 CLCN3P51790 818 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 CSHL1Q14406 222 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 FUT11Q495W5 492 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 CYBRD1Q53TN4 286 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 MPZL3Q6UWV2 235 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 ZC3HC1Q86WB0 502 aaKnown RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 FUNDC1Q8IVP5 155 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 STARD8Q92502 1023 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 ISL2Q96A47 359 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 C3orf30Q96M34 536 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 ADNPQ9H2P0 1102 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 BFARQ9NZS9 450 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 ADAM28Q9UKQ2 775 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 NUP205Q92621 2012 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 SNAP91O60641 907 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 RSL1D1O76021 490 aaKnown RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 ARL4AP40617 200 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 RPS3AP61247 264 aaKnown RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 KCNC4Q03721 635 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 CLCQ05315 142 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 IMPG1Q17R60 797 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 KIF19Q2TAC6 998 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 SAMD4BQ5PRF9 694 aaKnown RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 LCLAT1Q6UWP7 414 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 CCDC80Q76M96 950 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 DHRSXQ8N5I4 330 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 ABHD11Q8NFV4 315 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 SLC7A14Q8TBB6 771 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 FAM149B1Q96BN6 582 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 SNX27Q96L92 541 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 IL12RB2Q99665 862 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 EXD2Q9NVH0 621 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 TUBA8Q9NY65 449 aaPredicted RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 UTP6Q9NYH9 597 aaKnown RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 VTI1BQ9UEU0 232 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 DSEQ9UL01 958 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 GIT1Q9Y2X7 761 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 LRRC37AA6NMS7 1700 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 SPATA31C2B4DYI2 1134 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 FAM72CH0Y354 149 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 PPP6CO00743 305 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 B4GALT4O60513 344 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 CLPXO76031 633 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 STAG3L1P0CL83 205 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 HSPA1AP0DMV8 641 aaKnown RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 HSPA1BP0DMV9 641 aaKnown RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 EEF1DP29692 281 aaKnown RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 TPTEP56180 551 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 ACAP2Q15057 778 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 CYP51A1Q16850 503 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 FAM72AQ5TYM5 149 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 ANKRD34AQ69YU3 496 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 FAM72DQ6L9T8 149 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 TMEM135Q86UB9 458 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 FAM72BQ86X60 149 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 SCAIQ8N9R8 606 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 HEXDCQ8WVB3 486 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 TRUB1Q8WWH5 349 aaKnown RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 EXT2Q93063 718 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 MLPHQ9BV36 600 aaPredicted RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 PPP1R1BQ9UD71 204 aaPredicted RBP11.79□□□□□ -0.52
CPSF3-202ENST00000460593 SNX10Q9Y5X0 201 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 USP3Q9Y6I4 520 aa11.79□□□□□ -0.52
CPSF3-202ENST00000460593 TARM1B6A8C7 271 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 KPNA6O60684 536 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 FASP25445 335 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 GHRHRQ02643 423 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 PPP1R8Q12972 351 aaKnown RBP11.78□□□□□ -0.52
CPSF3-202ENST00000460593 NAB1Q13506 487 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 INAVAQ3KP66 663 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 RABL3Q5HYI8 236 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 ARHGAP17Q68EM7 881 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 C4orf22Q6V702 233 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 ITIH5Q86UX2 942 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 ANKRD52Q8NB46 1076 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 PCYOX1LQ8NBM8 494 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 ZNF420Q8TAQ5 688 aaPredicted RBP11.78□□□□□ -0.52
CPSF3-202ENST00000460593 ADAMTS16Q8TE57 1224 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 ZFP90Q8TF47 636 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 NT5C1AQ9BXI3 368 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 TPK1Q9H3S4 243 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 AGPAT4Q9NRZ5 378 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 CCM2LQ9NUG4 571 aaPredicted RBP11.78□□□□□ -0.52
CPSF3-202ENST00000460593 NOX1Q9Y5S8 564 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 ZNF701M0R085 212 aaPredicted RBP11.78□□□□□ -0.52
CPSF3-202ENST00000460593 TIMM44O43615 452 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 H2AFYO75367 372 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms