RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 LAMA3Q16787 3333 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 PARP14Q460N5 1801 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 KLHL33A6NCF5 533 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 SRP72O76094 671 aaKnown RBP12.06□□□□□ -0.48
SMPD4-213ENST00000454468 SIX3O95343 332 aaPredicted RBP12.06□□□□□ -0.48
SMPD4-213ENST00000454468 FGFR3P22607 806 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 PIK3R1P27986 724 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 HADHAP40939 763 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 MAGEA6P43360 314 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 CDK7P50613 346 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 PRKAA1Q13131 559 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 KRT72Q14CN4 511 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 PTPRRQ15256 657 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 HSF5Q4G112 596 aaPredicted RBP12.06□□□□□ -0.48
SMPD4-213ENST00000454468 XKR4Q5GH76 650 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 PITRM1Q5JRX3 1037 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 BRMS1LQ5PSV4 323 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 GCNAQ96QF7 691 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 SEMA6AQ9H2E6 1030 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 SEMA4BQ9NPR2 832 aaPredicted RBP12.06□□□□□ -0.48
SMPD4-213ENST00000454468 LNPEPQ9UIQ6 1025 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 ADAM28Q9UKQ2 775 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 KNL1Q8NG31 2342 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 H0Y626 953 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 KLF11O14901 512 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 ALDH1A2O94788 518 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 SERPINF2P08697 491 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 GABRB3P28472 473 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 ARSDP51689 593 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 INHBEP58166 350 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 MS4A13Q5J8X5 152 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 STEAP4Q687X5 459 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 SORT1Q99523 831 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 SERPINI1Q99574 410 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 AURKCQ9UQB9 309 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 PCDHB12Q9Y5F1 795 aa12.06□□□□□ -0.48
SMPD4-213ENST00000454468 SNUPNO95149 360 aaKnown RBP12.05□□□□□ -0.48
SMPD4-213ENST00000454468 CTPS1P17812 591 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 AIF1P55008 147 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 HTRA3P83110 453 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 RALGDSQ12967 914 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 SGO1Q5FBB7 561 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 CLLU1OSQ5K130 101 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 RNF19BQ6ZMZ0 732 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 ARHGAP12Q8IWW6 846 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 KYQ8NBH2 561 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 TUBGCP3Q96CW5 907 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 COPS7BQ9H9Q2 264 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-213ENST00000454468 NSMCE4AQ9NXX6 385 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 LRRC14BA6NHZ5 514 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 SNNO75324 88 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-213ENST00000454468 SLC35E2BP0CK96 405 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 THRAP10827 490 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 GLDCP23378 1020 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 FUT11Q495W5 492 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 CALML6Q8TD86 181 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 MAGEC3Q8TD91 643 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 MRGPRX2Q96LB1 330 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 MRPL1Q9BYD6 325 aaKnown RBP12.05□□□□□ -0.48
SMPD4-213ENST00000454468 MID1IP1Q9NPA3 183 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 MARCH4Q9P2E8 410 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-213ENST00000454468 VWA7Q9Y334 891 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 RAP2CQ9Y3L5 183 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-213ENST00000454468 RHOCP08134 193 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 OXCT1P55809 520 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 FOXD4Q12950 439 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-213ENST00000454468 ZNF177Q13360 481 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-213ENST00000454468 TSTA3Q13630 321 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-213ENST00000454468 HECTD2Q5U5R9 776 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 POTEHQ6S545 545 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 TIFABQ6ZNK6 161 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 CCDC117Q8IWD4 279 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-213ENST00000454468 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.05□□□□□ -0.483e-6■■■■■ 34.1
SMPD4-213ENST00000454468 TRPC4APQ8TEL6 797 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 GDPD5Q8WTR4 605 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 IRGQQ8WZA9 623 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 FCRL5Q96RD9 977 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 CCDC106Q9BWC9 280 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 CDH22Q9UJ99 828 aa12.05□□□□□ -0.48
SMPD4-213ENST00000454468 AP3B1O00203 1094 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 NR5A2O00482 541 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 ATP6V1B1P15313 513 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 NAB1Q13506 487 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 RBBP7Q16576 425 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 BNC2Q6ZN30 1099 aaPredicted RBP12.04□□□□□ -0.48
SMPD4-213ENST00000454468 ATG14Q6ZNE5 492 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 TPGS1Q6ZTW0 290 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 MAVSQ7Z434 540 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 RTN4RL1Q86UN2 441 aaPredicted RBP12.04□□□□□ -0.48
SMPD4-213ENST00000454468 DIS3LQ8TF46 1054 aaKnown RBP12.04□□□□□ -0.48
SMPD4-213ENST00000454468 ITFG2Q969R8 447 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 SLC39A3Q9BRY0 314 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 APOL5Q9BWW9 433 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 POLR1EQ9GZS1 481 aaKnown RBP12.04□□□□□ -0.48
SMPD4-213ENST00000454468 FBRSL1Q9HCM7 1045 aaKnown RBP12.04□□□□□ -0.48
SMPD4-213ENST00000454468 OXSMQ9NWU1 459 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 VPS28Q9UK41 221 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 Q9Y3F1 56 aa12.04□□□□□ -0.48
SMPD4-213ENST00000454468 MOXD2PA6NHM9 499 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms