RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 SIRPB2Q5JXA9 342 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 RNF43Q68DV7 783 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 FSTL4Q6MZW2 842 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CXorf57Q6NSI4 855 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 ESRP1Q6NXG1 681 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 FAM47EQ6ZV65 393 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 GAREM2Q75VX8 874 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 NUDCD3Q8IVD9 361 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CARNMT1Q8N4J0 409 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 DCLK2Q8N568 766 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 MAB21L3Q8N8X9 362 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 SREK1Q8WXA9 508 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 VPS39Q96JC1 886 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 TSNARE1Q96NA8 513 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CYP2S1Q96SQ9 504 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 AGAP2Q99490 1192 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 GPR22Q99680 433 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 TSSK1BQ9BXA7 367 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 ACTR5Q9H9F9 607 aaPredicted RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 SNX15Q9NRS6 342 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 IGSF5Q9NSI5 407 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 ZMYM5Q9UJ78 669 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 ANKRD6Q9Y2G4 727 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CXorf51AA0A1B0GTR3 108 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 C2orf71A6NGG8 1288 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CCT8L1PA6NM43 557 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 C5orf67F2Z3F1 127 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 GFRA2O00451 464 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 INSIG1O15503 277 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 SLC7A4O43246 635 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 TGDSO95455 350 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 NDST3O95803 873 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CYBBP04839 570 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 APOA4P06727 396 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 COL6A2P12110 1019 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 MYL4P12829 197 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 PTPN2P17706 415 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 ARCN1P48444 511 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 SGSHP51688 502 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CORO7P57737 925 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CYP4F8P98187 520 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 NSUN2Q08J23 767 aaKnown RBP eCLIP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 PDE1CQ14123 709 aaPredicted RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CNGA3Q16281 694 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 PLPP4Q5VZY2 271 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 PDE12Q6L8Q7 609 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CDHR3Q6ZTQ4 885 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 TRPM8Q7Z2W7 1104 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 KDELC2Q7Z4H8 507 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CCDC91Q7Z6B0 441 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 GALNT7Q86SF2 657 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 ZC3HC1Q86WB0 502 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 C7orf61Q8IZ16 206 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CCDC63Q8NA47 563 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 DCAF4L2Q8NA75 395 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 C1orf216Q8TAB5 229 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 SPPL3Q8TCT6 385 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 POF1BQ8WVV4 589 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 USP13Q92995 863 aaPredicted RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 E2F7Q96AV8 911 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 ZNF778Q96MU6 729 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 NUDCD1Q96RS6 583 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 SLC22A12Q96S37 553 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 LBHD1Q9BQE6 289 aaPredicted RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 CORO1BQ9BR76 489 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 MCMBPQ9BTE3 642 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 C2orf49Q9BVC5 232 aaPredicted RBP10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 MCOLN1Q9GZU1 580 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 EVA1BQ9NVM1 165 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 IL1RAPL1Q9NZN1 696 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 SLC17A6Q9P2U8 582 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 TLK1Q9UKI8 766 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 USH1CQ9Y6N9 552 aa10.66□□□□□ -0.7
VIPAS39-203ENST00000448935 E2F8A0AVK6 867 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 MROH6A6NGR9 719 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 GREM1O60565 184 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 XYLBO75191 536 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 CRTAMO95727 393 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 BPGMP07738 259 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 HNRNPA1P09651 372 aaKnown RBP eCLIP10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 ATXN1LP0C7T5 689 aaKnown RBP10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 CD151P48509 253 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 CLCN4P51793 760 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 EPHA5P54756 1037 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 ERVFC1P60507 584 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 PRAMEP78395 509 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 SLC12A1Q13621 1099 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 LACTB2Q53H82 288 aaPredicted RBP10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 RETSATQ6NUM9 610 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 NEPROQ6NW34 567 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 ZNF557Q8N988 423 aaPredicted RBP10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 TDRD5Q8NAT2 981 aaKnown RBP10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 C2CD4AQ8NCU7 369 aaPredicted RBP10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 OR52K2Q8NGK3 314 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 BRSK1Q8TDC3 778 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 MICAL1Q8TDZ2 1067 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 DDI1Q8WTU0 396 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 STYXQ8WUJ0 223 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 CCT6BQ92526 530 aa10.65□□□□□ -0.7
VIPAS39-203ENST00000448935 WBP2Q969T9 261 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms