RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 AGO1Q9UL18 857 aaKnown RBP15.49■□□□□ 0.07
PTPRF-206ENST00000429895 L1RE1Q9UN81 338 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 CCL16O15467 120 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 ULK1O75385 1050 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 KHDRBS3O75525 346 aaKnown RBP15.49■□□□□ 0.07
PTPRF-206ENST00000429895 PDE9AO76083 593 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 ELFN1P0C7U0 828 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 MAPKAPK3Q16644 382 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 C12orf29Q8N999 325 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 OR52K2Q8NGK3 314 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 ATXN2LQ8WWM7 1075 aaKnown RBP15.49■□□□□ 0.07
PTPRF-206ENST00000429895 OR8D1Q8WZ84 308 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 CERS2Q96G23 380 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 PDCD10Q9BUL8 212 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 ZNF143P52747 638 aaPredicted RBP15.49■□□□□ 0.07
PTPRF-206ENST00000429895 AHI1Q8N157 1196 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 MBOAT7Q96N66 472 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 DEFB118Q96PH6 123 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 ZMYM2Q9UBW7 1377 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 SLC28A1O00337 649 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 SLC28A2O43868 658 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 TOP3BO95985 862 aaKnown RBP15.49■□□□□ 0.07
PTPRF-206ENST00000429895 HOXC6P09630 235 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 ERCC2P18074 760 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 CASP5P51878 434 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 USP46P62068 366 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 CPSF6Q16630 551 aaKnown RBP eCLIP15.49■□□□□ 0.07
PTPRF-206ENST00000429895 FAM98AQ8NCA5 519 aaKnown RBP15.49■□□□□ 0.07
PTPRF-206ENST00000429895 ZNF248Q8NDW4 579 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 NRDE2Q9H7Z3 1164 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 SLC27A6Q9Y2P4 619 aa15.49■□□□□ 0.07
PTPRF-206ENST00000429895 CACNB4O00305 520 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 PDE2AO00408 941 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 RECQL5O94762 991 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 AKT2P31751 481 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 LSM3P62310 102 aaKnown RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 ZFP1Q6P2D0 407 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 ZNF563Q8TA94 476 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 SLC38A2Q96QD8 506 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 FNDC11Q9BVV2 318 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 CRISPLD1Q9H336 500 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 CERS4Q9HA82 394 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 TMEM138Q9NPI0 162 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 OR10H3O60404 316 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 PIAS1O75925 651 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 ATP4AP20648 1035 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 MC4RP32245 332 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 BRCC3P46736 316 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 ZNF135P52742 658 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 ACO2Q99798 780 aaKnown RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 EPB41L1Q9H4G0 881 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 BLOC1S4Q9NUP1 217 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 PLK2Q9NYY3 685 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 B4GALT5O43286 388 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 CTBP1Q13363 440 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 LYPLAL1Q5VWZ2 237 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 PSRC1Q6PGN9 363 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 KBTBD2Q8IY47 623 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 GLIS3Q8NEA6 775 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 LINGO1Q96FE5 620 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 TRAPPC9Q96Q05 1148 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 SPATA5L1Q9BVQ7 753 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 L2HGDHQ9H9P8 463 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 CLUP10909 449 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 RPL9P32969 192 aaKnown RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 CLCN5P51795 746 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 SLC25A3Q00325 362 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 MAP2K5Q13163 448 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 CDT1Q9H211 546 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 CLIC5Q9NZA1 410 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 GMPPBQ9Y5P6 360 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 KPNA4O00629 521 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 MLYCDO95822 493 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 TFPIP10646 304 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 HOXB8P17481 243 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 ARHGAP36Q6ZRI8 547 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 PHF10Q8WUB8 498 aaKnown RBP15.48■□□□□ 0.07
PTPRF-206ENST00000429895 FTHL17Q9BXU8 183 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 RPS6KA6Q9UK32 745 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 PCDHAC2Q9Y5I4 1007 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 CEMIPQ8WUJ3 1361 aa15.48■□□□□ 0.07
PTPRF-206ENST00000429895 DLC1Q96QB1 1528 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 TCEA3O75764 348 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 SQLEQ14534 574 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 GPRIN3Q6ZVF9 776 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-206ENST00000429895 AVILO75366 819 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 CCNA2P20248 432 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 MAPK8P45983 427 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 CBX2Q14781 532 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-206ENST00000429895 NDUFA5Q16718 116 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 C12orf50Q8NA57 414 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-206ENST00000429895 LGMNQ99538 433 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 LMAN2LQ9H0V9 348 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 EQTNQ9NQ60 294 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 CFAP97Q9P2B7 532 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 CDC42BPAQ5VT25 1732 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 WWP2O00308 870 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 BMP7P18075 431 aa15.47■□□□□ 0.07
PTPRF-206ENST00000429895 PSEN1P49768 467 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms