RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 OLIG2Q13516 323 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 PCSK7Q16549 785 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 MSS51Q4VC12 460 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 SIRPB2Q5JXA9 342 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 ARMC12Q5T9G4 340 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 SDE2Q6IQ49 451 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 GDPD4Q6W3E5 623 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 GSPT2Q8IYD1 628 aaKnown RBP14.37□□□□□ -0.11
SF3B1-204ENST00000414963 PIH1D2Q8WWB5 315 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 OR8D1Q8WZ84 308 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 SIGLEC10Q96LC7 697 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 APOL2Q9BQE5 337 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 MTG2Q9H4K7 406 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 FBRSQ9HAH7 460 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 CD320Q9NPF0 282 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 DKK3Q9UBP4 350 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 PPM1HQ9ULR3 514 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 CA14Q9ULX7 337 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 CHKBQ9Y259 395 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 PPIL1Q9Y3C6 166 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 TEX264Q9Y6I9 313 aa14.37□□□□□ -0.11
SF3B1-204ENST00000414963 MAGEB16A2A368 324 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 ANKRD66B4E2M5 251 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 ADAM23O75077 832 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 PIGNO95427 931 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 PRNPP04156 253 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 EPHX1P07099 455 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 CTSLP07711 333 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 PDHA1P08559 390 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 CD72P21854 359 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 CHRNA4P43681 627 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 SEC13P55735 322 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 PDIA2Q13087 525 aaKnown RBP14.36□□□□□ -0.11
SF3B1-204ENST00000414963 FZD5Q13467 585 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 C2orf27AQ580R0 203 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 ARSIQ5FYB1 569 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 BRAT1Q6PJG6 821 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 KDELC2Q7Z4H8 507 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 TMC3Q7Z5M5 1100 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 DSG4Q86SJ6 1040 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 STK40Q8N2I9 435 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 AGGF1Q8N302 714 aaeCLIP14.36□□□□□ -0.11
SF3B1-204ENST00000414963 ZNF366Q8N895 744 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 DNAAF3Q8N9W5 541 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 SRPK1Q96SB4 655 aaKnown RBP14.36□□□□□ -0.11
SF3B1-204ENST00000414963 IL22Q9GZX6 179 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 ZDHHC6Q9H6R6 413 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 CD248Q9HCU0 757 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 ARGLU1Q9NWB6 273 aaPredicted RBP14.36□□□□□ -0.11
SF3B1-204ENST00000414963 BFARQ9NZS9 450 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 FBXL21Q9UKT6 434 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 PCDHB9Q9Y5E1 797 aa14.36□□□□□ -0.11
SF3B1-204ENST00000414963 COL6A3P12111 3177 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 KANSL1LA0AUZ9 987 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 CHURC1-FNTBB4DL54 471 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 BNIP3LO60238 219 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 LEFTY1O75610 366 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 KLF8O95600 359 aaPredicted RBP14.35□□□□□ -0.11
SF3B1-204ENST00000414963 MAGEA4P43358 317 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 GRIA4P48058 902 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 SESN2P58004 480 aaPredicted RBP14.35□□□□□ -0.11
SF3B1-204ENST00000414963 POLR2LP62875 67 aaKnown RBP14.35□□□□□ -0.11
SF3B1-204ENST00000414963 DHX9Q08211 1270 aaKnown RBP14.35□□□□□ -0.11
SF3B1-204ENST00000414963 LRRC32Q14392 662 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 QPCTQ16769 361 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 BBS9Q3SYG4 887 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 CCDC38Q502W7 563 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 ZNF805Q5CZA5 627 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 SPDYCQ5MJ68 293 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 BEND6Q5SZJ8 279 aaPredicted RBP14.35□□□□□ -0.11
SF3B1-204ENST00000414963 CERCAMQ5T4B2 595 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 TRMT10CQ7L0Y3 403 aaKnown RBP14.35□□□□□ -0.11
SF3B1-204ENST00000414963 CCNJLQ8IV13 435 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 MREGQ8N565 214 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 SLC25A41Q8N5S1 370 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 PTCD2Q8WV60 388 aaKnown RBP14.35□□□□□ -0.11
SF3B1-204ENST00000414963 RANBP9Q96S59 729 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 EBNA1BP2Q99848 306 aaKnown RBP14.35□□□□□ -0.11
SF3B1-204ENST00000414963 NAT9Q9BTE0 207 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 OSBPL6Q9BZF3 934 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 RSPH9Q9H1X1 276 aaPredicted RBP14.35□□□□□ -0.11
SF3B1-204ENST00000414963 SAYSD1Q9NPB0 183 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 LTB4R2Q9NPC1 389 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 PHTF1Q9UMS5 762 aa14.35□□□□□ -0.11
SF3B1-204ENST00000414963 A0A1W2PQF6 199 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 DYNC1I1O14576 645 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 SYNCRIPO60506 623 aaKnown RBP14.34□□□□□ -0.11
SF3B1-204ENST00000414963 RNF40O75150 1001 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 UGT2B4P06133 528 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 TSHRP16473 764 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 TPH1P17752 444 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 MGAT1P26572 445 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 TARSP26639 723 aaKnown RBP14.34□□□□□ -0.11
SF3B1-204ENST00000414963 SUOXP51687 545 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 ZXDAP98168 799 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 LAMB3Q13751 1172 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 GALNT3Q14435 633 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 PCID2Q5JVF3 399 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 EOGTQ5NDL2 527 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 CCDC25Q86WR0 208 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms