RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 DGKBQ9Y6T7 804 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 E7ENX8 843 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 OPLAHO14841 1288 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 AP5Z1O43299 807 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 PAPSS2O95340 614 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 KATNAL2Q8IYT4 538 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF451Q9Y4E5 1061 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 SAGP10523 405 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 ACAT1P24752 427 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 RPA1P27694 616 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 PPIL2Q13356 520 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF730Q6ZMV8 503 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 RD3Q7Z3Z2 195 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 TCP10LQ8TDR4 215 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 TBCCD1Q9NVR7 557 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 DHRS12A0PJE2 317 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 NPTXRO95502 500 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 WEE1P30291 646 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 MCL1Q07820 350 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 PFKFB4Q16877 469 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 OR4A15Q8NGL6 344 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 PI4K2AQ9BTU6 479 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 PUS3Q9BZE2 481 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 TPK1Q9H3S4 243 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 ABCB9Q9NP78 766 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 LEF1Q9UJU2 399 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 SNRPB2P08579 225 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 AKT2P31751 481 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 GPD2P43304 727 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 MIB1Q86YT6 1006 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 ATG4AQ8WYN0 398 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 CAVIN3Q969G5 261 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 TLR8Q9NR97 1041 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 EPHA7Q15375 998 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 SCGB3A2Q96PL1 93 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 RTKNQ9BST9 563 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 CHIAQ9BZP6 476 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 CAMTA2O94983 1202 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 MREGQ8N565 214 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF75CPQ92670 426 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 PSMD9O00233 223 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 SPTLC1O15269 473 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 SSX4O60224 188 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 MAGEC1O60732 1142 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 DGKAP23743 735 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 MFSD10Q14728 455 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 ISLR2Q6UXK2 745 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 MKL1Q969V6 931 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 RBM4BQ9BQ04 359 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 RBM4Q9BWF3 364 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 NOL11Q9H8H0 719 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 MAGEE1Q9HCI5 957 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 FKBP7Q9Y680 259 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 NPC1L1Q9UHC9 1359 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 RBAK-RBAKDNI3L0D1 243 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 PDCD5O14737 125 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 LSM8O95777 96 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 SCGB2A2Q13296 93 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 USP45Q70EL2 814 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 COLGALT1Q8NBJ5 622 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 SMG7Q92540 1137 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 NKD1Q969G9 470 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 RAB26Q9ULW5 256 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 KDM6AO15550 1401 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 MPZL2O60487 215 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 ENDOD1O94919 500 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 CYP2F1P24903 491 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 MAN2A2P49641 1150 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 MPPE1Q53F39 396 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 ZYG11AQ6WRX3 759 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 TMC8Q8IU68 726 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 DNAJB14Q8TBM8 379 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 FAM105AQ9NUU6 356 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 TAS2R7Q9NYW3 318 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 PLEKHG2Q9H7P9 1386 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 CLDN25C9JDP6 229 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 ALADP13716 330 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 FMO4P31512 558 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 IL6STP40189 918 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 ATP13A4Q4VNC1 1196 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 LINGO2Q7L985 606 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 SSX6Q7RTT6 188 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 ADGRF2Q8IZF7 708 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 HM13Q8TCT9 377 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 CIPCQ9C0C6 399 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 THAP2Q9H0W7 228 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 PAK6Q9NQU5 681 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 MOCS1Q9NZB8 636 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 GTF3C4Q9UKN8 822 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 PCDHGB5Q9Y5G0 923 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 IFNA2P01563 188 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 SPARCP09486 303 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 EFEMP1Q12805 493 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 ILDR2Q71H61 639 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 RHBGQ9H310 441 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 KCNF1Q9H3M0 494 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 PCDH9Q9HC56 1237 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 GIN1Q9NXP7 522 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 CLPXO76031 633 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 TDP2O95551 362 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms