RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 CRISPLD1Q9H336 500 aa13.69□□□□□ -0.22
LIMS1-205ENST00000410093 PDFQ9HBH1 243 aa13.69□□□□□ -0.22
LIMS1-205ENST00000410093 ARL8BQ9NVJ2 186 aa13.69□□□□□ -0.22
LIMS1-205ENST00000410093 IL1RAPL1Q9NZN1 696 aa13.69□□□□□ -0.22
LIMS1-205ENST00000410093 TRIM33Q9UPN9 1127 aa13.69□□□□□ -0.22
LIMS1-205ENST00000410093 RAP2CQ9Y3L5 183 aa13.69□□□□□ -0.22
LIMS1-205ENST00000410093 TET1Q8NFU7 2136 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 ABHD14A-ACY1A0A1B0GW23 586 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 GSC2O15499 205 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 KDELR3O43731 214 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 NPHS1O60500 1241 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 RBP1P09455 135 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 ARNTP27540 789 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 OR1D2P34982 312 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 SLC1A2P43004 574 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 GATMP50440 423 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 DSG1Q02413 1049 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 GNA12Q03113 381 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 PLD1Q13393 1074 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 MSLNQ13421 630 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-205ENST00000410093 SEPT6Q14141 434 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 ZRSR2Q15696 482 aaKnown RBP13.68□□□□□ -0.22
LIMS1-205ENST00000410093 TAF12Q16514 161 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 CFAP157Q5JU67 520 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 CES4AQ5XG92 561 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 ZNF470Q6ECI4 717 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 NADSYN1Q6IA69 706 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 LRRC8EQ6NSJ5 796 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 LGI2Q8N0V4 545 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 PLD6Q8N2A8 252 aaKnown RBP13.68□□□□□ -0.22
LIMS1-205ENST00000410093 BRSK1Q8TDC3 778 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 GPR152Q8TDT2 470 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 CMTM5Q96DZ9 223 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 B3GALT6Q96L58 329 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 ZNF778Q96MU6 729 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 PSKH2Q96QS6 385 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 SORT1Q99523 831 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 MGME1Q9BQP7 344 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 CCDC106Q9BWC9 280 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 C20orf27Q9GZN8 174 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 CDH19Q9H159 772 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 CCSER2Q9H7U1 834 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 POPDC3Q9HBV1 291 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 FBXO6Q9NRD1 293 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-205ENST00000410093 NOP53Q9NZM5 478 aaKnown RBP13.68□□□□□ -0.22
LIMS1-205ENST00000410093 STOML2Q9UJZ1 356 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 RUVBL2Q9Y230 463 aaKnown RBP13.68□□□□□ -0.22
LIMS1-205ENST00000410093 SSX2IPQ9Y2D8 614 aa13.68□□□□□ -0.22
LIMS1-205ENST00000410093 LAMA2P24043 3122 aaKnown RBP13.67□□□□□ -0.22
LIMS1-205ENST00000410093 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-205ENST00000410093 A0A1B0GVM2 712 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 CCDC189A1A4V9 331 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 TCAF2A6NFQ2 919 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 ITM2AO43736 263 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 CRTAMO95727 393 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 NDST3O95803 873 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 OGNP20774 298 aaKnown RBP13.67□□□□□ -0.22
LIMS1-205ENST00000410093 GABRB3P28472 473 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 PRAMEP78395 509 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 ZNF177Q13360 481 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-205ENST00000410093 RAB33AQ14088 237 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 RCN2Q14257 317 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 PCSK7Q16549 785 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 SIRPB2Q5JXA9 342 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 ADGRF1Q5T601 910 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 C6orf163Q5TEZ5 329 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 MRNIPQ6NTE8 343 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 PRSS55Q6UWB4 352 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-205ENST00000410093 ZCCHC23Q6ZST2 131 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 PIWIL4Q7Z3Z4 852 aaKnown RBP13.67□□□□□ -0.22
LIMS1-205ENST00000410093 SLC22A9Q8IVM8 553 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 AFAP1L2Q8N4X5 818 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 TEX9Q8N6V9 391 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 FAM13CQ8NE31 585 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 GIPC2Q8TF65 315 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 UTP4Q969X6 686 aaKnown RBP13.67□□□□□ -0.22
LIMS1-205ENST00000410093 ATXN7L3BQ96GX2 97 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 FAR2Q96K12 515 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 ZNF558Q96NG5 402 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 DCLRE1BQ9H816 532 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.67□□□□□ -0.22
LIMS1-205ENST00000410093 UBA2Q9UBT2 640 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-205ENST00000410093 VPS9D1Q9Y2B5 631 aa13.67□□□□□ -0.22
LIMS1-205ENST00000410093 TARM1B6A8C7 271 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 PFDN6O15212 129 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 SOAT2O75908 522 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 TOP3BO95985 862 aaKnown RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 HMBSP08397 361 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 ATXN1LP0C7T5 689 aaKnown RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 KITP10721 976 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 LAG3P18627 525 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 PSMA3P25788 255 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 CCNG1P51959 295 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 RAP1GDS1P52306 607 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 OXCT1P55809 520 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 NAA20P61599 178 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 DSC2Q02487 901 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 GALNT1Q10472 559 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 CTBP1Q13363 440 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 HSF5Q4G112 596 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms